Prodigiosinella confusarubida ATCC 39006: CWC46_02950
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Entry
CWC46_02950 CDS
T05968
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
serq03032
]
CWC46_02950 (gyrB)
03400 DNA repair and recombination proteins [BR:
serq03400
]
CWC46_02950 (gyrB)
Enzymes [BR:
serq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
CWC46_02950 (gyrB)
DNA replication proteins [BR:
serq03032
]
Prokaryotic type
DNA Topoisomerases
CWC46_02950 (gyrB)
DNA repair and recombination proteins [BR:
serq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CWC46_02950 (gyrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
GyrB_hook
Toprim
HATPase_c
HATPase_c_3
Allatotropin-like_C
DUF8085
DUF6865
Motif
Other DBs
NCBI-ProteinID:
AUG98866
UniProt:
A0A2I5TF34
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All DBs
Position
637865..640276
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AA seq
803 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIV
VTIHTDNSVSVQDDGRGIPTGIHKEEGVSAVEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVICREGKVHEQTYRHGVAQAPLKVVGDTEKTGTALRFWPSYETFTNQI
EFQFDILAKRLRELSFLNSGVSIRLFDEREEGKSEHFHYEGGIKAFVDYLNRNKTPIHPT
VFYFSTMKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMDK
EGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLVNEKLVD
YLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALSE
LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVKK
GKQEQYIKDDEAMDQYQIALALDGATLHANAHAPALAGEPLEKLVTEHYSVQKLIGRMER
RYPRALLNALIYQPQLKEEMLDDREQVQQWMAALVSHLNENEQHGSAYSVVIRDSQERHE
PVLRVRTHGMDTDYALDFAFIHGNEYRKINQLGEKLRGLIEEDAYIERGERRQPAISFEL
ALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAIAADELFTTLM
GDAVEPRRAFIEENALKAANIDI
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctcaagtatcaaggtattaaaagggctggatgcggtacgt
aaacgcccgggtatgtatatcggtgatacagatgatggtaccggtctacatcacatggta
ttcgaggtggtggacaacgctatcgacgaagcactcgctggctactgtaaagatattgtt
gtgacgattcataccgacaattcggtgtcggtgcaggatgatggccgcggtattcctacc
ggtattcataaagaagaaggcgtgtctgctgttgaagtcatcatgacggtgttacatgct
ggcggaaaatttgatgataactcttataaagtatccggcggtctgcacggtgtgggggtt
tctgtcgtcaatgccttgtcggaaaagctggaactggtaatttgccgcgaaggtaaagtt
catgagcaaacgtatcgtcatggcgtggcgcaagcgccgctaaaagtggtgggcgatacg
gagaaaaccggtacggctctgcgtttctggccaagctatgaaacgtttaccaatcagatt
gaattccagtttgatattcttgccaagcgtctgcgtgagttgtcattcctgaattccggt
gtttccatccgtttgtttgatgagcgtgaagaaggcaagtccgagcatttccattacgaa
ggcggtatcaaagcgtttgtggattacctcaaccgtaacaagacaccgattcatccaacc
gtgttctacttctctacgatgaaagatggaatcggtgttgaagtcgcgttgcagtggaac
gatggcttccaggaaaatatttactgttttaccaataatattccacagcgtgatggtggt
acgcatctggccggtttccgtgccgcaatgacgcgtactctcaacacttatatggataaa
gaaggttatagcaaaaaggccaaaatcagcgccactggcgatgatgcccgcgaaggtctg
attgctgttgtctcggtcaaggttcccgatcctaaattttcttcccagaccaaagacaag
ctggtttcatcagaagtcaaaaccgccgttgaatcgttggtgaatgagaagctggtggac
tatctgatggaaaatccgtcggatgccaaaatcgtggtaggcaaaattattgatgccgcc
cgtgctcgtgaagccgcacgtaaagcgcgtgatatgacccgtcgtaaaggggcgctggat
ttggctggtttgccgggtaagttggcagactgtcaggaacgcgacccggcgttgtctgaa
ctttacctggtggaaggggactcggcgggaggctcagccaagcagggccgtaaccgtaag
aatcaggccattttgccactgaaagggaaaatcctgaacgtcgaaaaggcccgctttgac
aagatgctgtcttcgcaagaagttgcaacgctgattaccgcactgggctgtggtatcggc
cgtgatgagtacaacccggacaaactgcgttatcacagcatcatcatcatgaccgatgcg
gatgtggatggttctcacattcgtacactgctgttgacgttcttctatcgtcagatgccg
gaaattgttgaacgtgggcatgtgtttatcgcacagccgccgttgtataaagtaaaaaaa
ggcaagcaggaacaatacatcaaagatgatgaggcgatggaccagtaccagatcgctttg
gcgctggatggtgccaccctgcacgctaacgcccatgcgccagcgttggcgggtgagccg
ctggaaaaactggtgaccgaacattatagcgtacagaaactgattggtcgcatggagcgt
cgttatccacgggcactactgaatgctttgatttatcagccgcaactgaaagaagagatg
ctggatgatcgtgaacaggtgcagcagtggatggccgcgctggttagccatctgaatgaa
aacgagcagcacggcagtgcgtacagtgtggtgattcgtgattctcaggaacggcatgag
ccggtgctgcgggtgcgaacgcatggcatggatactgattatgcgctggattttgcgttt
attcatggtaatgagtaccgtaaaatcaatcagttaggtgaaaaattacgcggcctgatt
gaagaagatgcttatatagaacgcggtgaacgccgtcagcctgccatcagttttgagctg
gcgctggagtggctggtgaaagagtctcgccgtggtttggctattcagcgttataaaggg
ctgggcgagatgaacccggatcagttgtgggaaaccaccatggacccgaccagtcgccgc
atgctacgcgttacggtgaaagacgctattgccgctgatgaactgtttactacgctgatg
ggtgatgctgtagaaccgcgtcgggcctttatcgaagagaatgccctgaaagcggcaaat
attgatatctga
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