Prodigiosinella confusarubida ATCC 39006: CWC46_03805
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Entry
CWC46_03805 CDS
T05968
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC46_03805 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serq03021
]
CWC46_03805 (rho)
03019 Messenger RNA biogenesis [BR:
serq03019
]
CWC46_03805 (rho)
Transcription machinery [BR:
serq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CWC46_03805 (rho)
Messenger RNA biogenesis [BR:
serq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CWC46_03805 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA_25
AAA
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
AUG99018
LinkDB
All DBs
Position
828611..829870
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAQNIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGETDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttaattactctcggcgaaaat
atggggctggaaaacctggctcgtatgcgtaaacaggatattattttcgccatacttaag
cagcatgccaaaagtggtgaagatatttttggtgacggtgtgctggaaatattgcaggat
ggtttcggtttcctccgctctgctgacagctcctacctcgccggtcctgatgatatctat
gtttctcccagtcaaatccgccggttcaaccttcgtactggtgatactatctctggtaaa
attcgcccgccgaaagagggcgaacgttattttgccttgttgaaagttaacgaagttaac
tatgacaaacctgaaaatgcgcgcagtaagattctgtttgagaacctgactccgctgcat
gctaattcgcgcctgcgtatggaacgtggtaacggttctactgaagatttgactgcccgt
gtgctggatctggctgcgccgattggccgtggtcagcgtggactgattgtggctccgccg
aaagccgggaagaccatgttgttgcagaatattgcgcagaatattgcgtataaccatcct
gattgcgtgctgatggtgttgctgattgacgaacgtccggaagaagtcacagagatgcag
cgtttggttaaaggagaggtgatagcttctacctttgatgaaccggcttcccgccatgtg
caagttgctgagatggtgatcgagaaagccaagcgtcttgtcgagcacaaaaaagatgtc
attattctgctggactccattactcgtctggcgcgcgcctataacactgtcgtaccatcg
tcgggtaaagtattaaccggcggtgtggatgctaacgctttacatcgccctaaacgtttc
tttggcgctgcacgtaacgttgaagaaggtggcagtctgacgattattgccacggcgtta
atcgacaccggctccaaaatggatgaagtgatctacgaagagtttaaaggtactggcaac
atggaactgcatctctctcgtaagatcgcagaaaaacgtgtgttccccgcgattgattac
aaccgttccggtacacgtaaggaagagttgttaaccacgtctgaagagctacagaagatg
tggattctgcgcaaaatcattcatcctatgggtgaaactgatgcgatggagttcctgatt
aataagctggcaatgacgaaaaccaatgatgagttcttcgacatgatgaaacgttcgtaa
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