Prodigiosinella confusarubida ATCC 39006: CWC46_04135
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Entry
CWC46_04135 CDS
T05968
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC46_04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serq03019
]
CWC46_04135
03400 DNA repair and recombination proteins [BR:
serq03400
]
CWC46_04135
Enzymes [BR:
serq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CWC46_04135
Messenger RNA biogenesis [BR:
serq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWC46_04135
DNA repair and recombination proteins [BR:
serq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CWC46_04135
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AUG99077
UniProt:
A0A2I5T3C8
LinkDB
All DBs
Position
896847..898673
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AA seq
608 aa
AA seq
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MSTAEVLNKEALAVQVLRETFGYQQFRPGQQGIINAVIGGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQTREQQLEVMTGCRNGQIKLLY
IAPERLTTDSFLEHLTYWNLSLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPSLPIVAL
TATADETTRRDIIRLLDLPDPLIHVSSFDRPNIRYTLVEKFKPLDQLWLFVQGQRGKSGI
IYCNSRAKVEDISARLQNRGLSVAAYHAGLDNNCRAQVQDAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPADMAWLRRCLEEKPAGAQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCGNCDICLDPPKRYDGLVDAQKAL
SCVYRVGQRFGMGYIAEVLRGANNQRIREFGHDKLPVYGIGRDKTQEQWVSILRQLIHLG
LLNQNITQHSALQLTEPARPILRGEVSLQLAVPRMINLKPRVSQKSYGGNYDRKLFAKLR
KLRKSIADDANIPPYVVFSDATLLEMAEIMPVTANELLTINGVGHRKLERFGMPFMTLIG
DHLNDEDN
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcagaagtattgaataaagaagcgctggcagtacaggtactgcgcgagacc
ttcggctatcagcaattccgtccgggtcaacaagggattatcaacgctgttatcggcggg
caggattgtctggttatcatgcccactggcggtggtaaatccctgtgctatcaaattccc
gcattggtgatggatggcttgacgctggtggtgtcgccgttgatttcgctgatgaaagat
caggtggatcaactgcaggcttacggtgtagccgccgcctgcctcaattctacccagacc
agggagcagcaactggaggtgatgacaggttgccgtaatggtcagattaaactgctgtac
attgcccctgagcgcctaactaccgacagttttctcgaacatctcacttactggaatctc
tcattgattgcggttgatgaagcacactgtatttctcagtggggacatgatttccggccg
gaatatcgggcactgggccagattaagcaacgtttcccttcattaccgattgtggctctg
accgctaccgccgacgaaaccacgcggcgggatatcatccggctgctggatttaccggat
ccgcttatccatgttagtagttttgaccggcccaatatccgctatacgctggtggagaaa
tttaaaccgctcgaccaactatggctgtttgtacaaggtcagcgtggcaaaagcggcatt
atttactgtaacagccgcgccaaagtggaagatatcagcgcccggttgcagaatcggggt
ctgagtgtcgcggcgtatcatgctggtctggataataattgtcgggcgcaggtacaggac
gcgtttcttcgtgacgacttgcaggtggtagtggcgacggtggcatttggtatgggcatc
aacaaacctaacgtgcggtttgtggtgcacttcgatattccacgcaatatcgaatcctat
tatcaggaaaccggacgggctgggcgggatggtctgccagccgaagccgcgttgttttat
gatccggctgatatggcgtggttgcgccgttgtctggaagagaaaccagcgggggcgcaa
ctggatattgagcggcacaagctcaacgccatgggcgcattcgccgaagcgcagacttgt
cgccgtctggtattgcttaactactttggtgaaggtcgccagcagccttgtggcaactgt
gatatttgcctcgatcctcccaaacgttatgatgggttggtggatgcacagaaggcgtta
tcctgtgtctatcgtgtcgggcaacgcttcgggatggggtatatcgcagaagttctgcgt
ggtgctaataatcagcgtatccgtgagtttgggcatgacaaactgccggtgtatggcatt
ggccgtgataagacgcaagagcaatgggttagcattctgcgacagcttattcatttggga
ttgctcaaccaaaatattactcagcattcggcattgcagttaactgaaccggcgcggcct
atcttgcggggcgaagtatcgttgcaactggcggtgccgcgcatgattaacctgaagccg
cgcgtcagtcaaaaatcttacggcggcaactatgatcgcaaactgtttgccaagctgcgg
aaattgcgaaaatccattgcagatgatgccaatattccgccgtatgtggtgttcagtgac
gccacattgttggaaatggcagaaatcatgccagtaacggccaatgaactgctgaccatt
aatggcgttgggcatcgtaaactggagcgttttggcatgccattcatgacattaattggc
gatcatcttaacgacgaggataactag
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