Prodigiosinella confusarubida ATCC 39006: CWC46_16635
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Entry
CWC46_16635 CDS
T05968
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC46_16635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serq03019
]
CWC46_16635
Enzymes [BR:
serq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CWC46_16635
Messenger RNA biogenesis [BR:
serq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CWC46_16635
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
AUH01295
UniProt:
A0A2I5T9P3
LinkDB
All DBs
Position
complement(3640325..3641689)
Genome browser
AA seq
454 aa
AA seq
DB search
MSFESLSLSADILRAVEEQGYREPTPIQRQAIPIVLAGRDLMASAQTGTGKTAGFTLPLL
QLLSTKPAPKGRRPVRALILTPTRELAAQIGENVLAYSKYLHLRSLVVFGGVSINPQMMK
LRGGVDILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKR
QNLLFSATFSDEIRTLAGKWLTNPASVEVARRNTPSELVAQHVHFVDKKRKRELLSYLIG
KHNWQQVLVFTRTKHGANHLAELLNKDGITATAIHGNKSQGARTRALANFKDGGIRVLVA
TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIE
RLLNREIPRIAIDGYEPDPTIKADPIQNGRQGGRDSRASAPRSQGDRQGPRGQGDHSRSA
RKPATSRPAGAGQRQQDGQPRRSPRPQQKSSAKA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatctctcagcctgagcgctgatattttgcgtgctgtggaagagcagggt
taccgcgaaccgacaccgatacagcgtcaggcaatcccgattgtgctggcaggccgtgac
ctgatggccagcgcacagaccggcacgggtaaaaccgccggtttcacgctgcccttgttg
caattactcagcactaaaccagctcctaaagggcgtcgtccggtacgggcgctgatcctg
actccaacccgtgaactggcagcacagattggtgaaaacgttctggcgtatagcaaatat
ctacatcttcgttcgctggtggttttcggcggtgtcagcattaatccacagatgatgaag
ctgcgtggcggcgtcgatattctgatcgccacgccgggacgattgctggatctggagcac
cagaacgcggttgatttgtcacaggtggaaatcctggtgttggatgaagccgaccggatg
ctggatatgggctttattcacgatatacgccgtgtactggcaaaattaccggccaaacgt
cagaacctgctgttttctgcaacgttctcggatgaaatcagaacactggccggtaaatgg
ttaaccaacccggcatcggtggaagtggcgcgtcgcaatacgccgtctgaactggtggcg
cagcatgtgcattttgttgataagaaacgcaaacgggaattgctttcctatttgattggc
aaacacaactggcagcaggtactggtttttacccgcaccaaacacggtgctaaccatttg
gccgagttgttgaataaagatggtattaccgccacggccattcatggtaataaaagtcag
ggtgctcgtacccgggcgttggcaaatttcaaagacggtggcatccgcgtactggttgcc
acggatattgccgctcgtgggctggatatcgaccagttaccccatgtggtgaactatgag
ttaccgaacgtgccggaagattatgtccatcgtattggtcgtaccgggcgagcggaagca
actggtgaagcgctgtcactggtgtgtgtggatgagcacaagttgctacgggatattgag
cgtctgttgaatcgtgaaattccccgtatagcgattgacggttatgaaccggacccgacg
attaaagccgacccgatccagaatggccgtcaaggtggccgtgatagtcgtgccagcgca
ccgcgtagccagggtgatcgccagggaccgcgcgggcagggcgatcattcccgttcggcg
cgtaaacccgcgacgtctcgaccagcaggagccggtcagcgccagcaggatggacaaccg
cgtcgttcaccgcgtccgcaacagaaatcttcagcaaaagcttaa
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