Prodigiosinella confusarubida ATCC 39006: CWC46_19635
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Entry
CWC46_19635 CDS
T05968
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CWC46_19635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serq03400
]
CWC46_19635
Enzymes [BR:
serq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CWC46_19635
DNA repair and recombination proteins [BR:
serq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CWC46_19635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AUH01820
UniProt:
A0A2I5TB66
LinkDB
All DBs
Position
complement(4319518..4322931)
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AA seq
1137 aa
AA seq
DB search
MFTVYHSNRLDLLKDVAAALIARQPLSNPFQQEVILVQSPGMAQWLQIELANSFNIAANI
RFPLPGVFLWEMYRLLMPDIPPESAFSKDAMAWKLMHLLPQHLEDPAFTLLAHYLQEDAD
KRKLHQLAGRIADLFDQYLIYRPDWITCWQQNEWVADIGDAQQWQSPLWRALVDYTHQLG
QPRWHHASLYERFIGLLARADACPPGLPVRVFICGISALPPIYLQALRALGQHIDVHLLF
TNPCRDYWSDIQDETFLAKLKRRQRLLYQNSQITTMSRPLFRQPNQAESLFKASGESSVG
NPLLASWGKLGRDHLYLLEQLDEVRSIDAFVDIDAHNLLSTLQHDILDLENHSVIATDQT
TLENSRQKRQLLPDDYSVSLHACHSPQREVEVLHDQLLAMMADHPELMPRDIIVMVADID
SYSPFIQAVFGNAPEERYLPFSISDQRARHAHPALQAVLSLLELPDSRFTAEQVLALLEV
PALAARFGIDEDGLRRLRLWVAESGIRWGLDDDNVRDLNLPATGQHTWRFGLTRMLLGYA
MDSQSGDWQGVLPYDESSGLIAELAGQLAELLMQLSRWRECLRQTREIQAWQPLCRQLLE
TFFKPDDDTEAALTLIEEQWQKIINMGEQSRYPEVVPITLLRDELARKLDQARLSQRFLA
GAINFCTLMPMRSIPFNVVCLLGMNDGVYPRTLPQLGFDLMTRPVRRGDRSRRDDDRYLF
LEALLSAQQRLYISFIGRSIQDNTRRFPSVLVSELMDYIAQSHYLPGDEDLDIDASADRV
IAHLWHEHSRMPFDTANFIPDPVPQSFAAEWLAAAGRQGESQPIFDHPLPHETYREITLD
DLSRFYRHPIKAFFQMRLGVSFLLEGSDMQEEEPFQVDGLNRYQMNIQLLNALINGGDAE
RLYQHVRAAGELPYGAFGQLYWQTQQEEMGQLAAKVREEWRPDPLGSQELDIELDGVRIT
GWLTQVQHDGLLRWRPGKLAMKDGMMLWLEHLAYCLMGGQGESRSYGSQDTGWRFPALSR
EQAREFLAVMVDGYQQGMNKPLLLLNRSGSAWLTEVYDREADRLSSDEDIRQKARLKLLD
AWQGNRMILGEGEDYYLQRIIRIMDSERVEQVIDAAQTWLLPPVRFNQYGKKVSIST
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgttcacggtttatcattcaaatcggctggatcttttaaaagacgtagcggcagcgttg
atcgcgaggcaaccgttgagtaatcccttccagcaggaagtgattttggttcagagtcca
ggtatggcgcagtggttgcagatagagttggcaaacagtttcaacattgccgccaatatc
cgattccctttaccaggcgtgtttctgtgggagatgtatcgtcttctgatgccggatatt
ccgccagagagtgccttcagtaaagatgccatggcctggaagctgatgcatttgctgcca
caacatctggaggatccggcgttcaccctgttggcgcactatctacaagaagatgctgac
aaacgcaaactgcaccagttggccgggcgtattgccgatctgttcgatcagtatctgatt
tatcgtcctgactggataacgtgctggcaacagaatgaatgggtagcagacatcggcgat
gcgcaacagtggcagtctcctctctggcgtgcgctggtggattacactcatcaattggga
caaccgcgatggcatcatgccagtctttatgaacgttttatcggtcttctggcgcgtgcc
gacgcatgcccgccgggattacctgtgcgagtatttatctgcggtatttcggcgcttccc
cctatttatttgcaggcgttgcgggcattggggcagcatattgatgtccatctcttgttt
accaacccatgccgggattactggagtgatattcaggatgaaacctttctggccaaacta
aagcgtcgacaacggttgctgtatcaaaacagccagataacgacgatgagtcggcctctg
tttcgtcagcccaatcaggctgaatccttattcaaggcgagtggcgagtcgagcgtggga
aatccgttacttgcctcatggggcaagctggggcgtgatcatctctatttgctggaacaa
ctggatgaggtgcgcagtattgatgcgttcgtggatatcgatgcccataacctgctttcg
actcttcagcacgatattcttgatctggaaaatcacagcgtaattgccaccgatcagacg
acattggaaaacagccgtcagaagcgacaactgttgcccgatgattactcggtttctctg
catgcctgccatagcccccagcgcgaagttgaggtcctgcatgatcaattgctggcaatg
atggcggaccatcctgaattgatgccacgggacatcattgtgatggtggcggatattgac
agctactccccgtttattcaggcggtattcgggaatgcgcctgaagagcgctacttgcct
ttctctatatcagaccagcgagctcgccatgcacatccggccttacaggcggtgctctcg
ttgctggagcttcctgacagccgtttcactgcggaacaggtgctggcgttgctggaggtc
ccggcgttggcagcgcgttttggcattgatgaagacggtctgcggcggttgcggctgtgg
gtggccgagtcgggtattcgctgggggttggacgatgataacgttcgagatctgaacctg
cctgccactggtcagcatacctggcgtttcggcctgacacggatgttgctcggttatgcg
atggatagccagtcaggagactggcaaggcgtattaccctacgatgaatccagtggtttg
atagccgaactggctgggcaattggccgaactgttgatgcagcttagccggtggcgggaa
tgtttgcgtcaaacccgtgaaatacaggcatggcaaccgctgtgtcgtcaattattggag
accttctttaaaccggatgatgataccgaagccgcgttaacactgatcgaagaacagtgg
caaaagattatcaatatgggagagcagtcccgttaccccgaggtggttcctatcacgttg
ttgcgggatgaactggccagaaagcttgatcaggcgcgtttgagtcagcgttttctcgcc
ggggcaattaacttttgtaccctgatgccgatgcgttctatcccctttaatgtcgtctgc
ctgctgggtatgaatgacggcgtctatccgcgaacactcccgcaattaggttttgattta
atgacccggccggttcgtcggggggatcgtagtcgccgtgatgatgatcgttatctgttt
ctggaagcgttgctttctgctcaacagcgtctctatatcagttttatcggacgttcaata
caggataacacccggcgttttccatctgtgctggtcagtgaactgatggactatattgcc
caaagccattatctgcccggtgacgaggatctggatattgatgccagtgcagacagggta
atagcacatttgtggcatgaacattcacggatgccgttcgataccgccaattttatcccg
gatccggttccgcaaagttttgcggcggaatggctggcggcggcaggccgtcagggagaa
agtcagccgatttttgatcatcctttaccgcatgaaacgtatcgcgagataaccttggat
gatttaagtcgcttttaccgccatccgataaaagcgttcttccagatgcgtctgggggtg
agtttcctgctggaaggaagtgacatgcaggaggaggaaccttttcaggttgatggtctg
aaccgttatcagatgaatattcaactgctcaatgccttgattaatggtggcgatgctgaa
cgtttgtatcagcatgtccgggcggcaggagagttaccttacggtgctttcggtcaactg
tattggcagactcagcaggaagaaatgggccaactggccgccaaggtgcgtgaagagtgg
cgacctgacccgctcggtagtcaggaactggatatcgagttggatggcgtacggataaca
ggctggctgacgcaggttcagcatgatggtttgttacgctggcgccccggcaagttggcg
atgaaagacggcatgatgttgtggctggaacatttggcctattgcctgatgggcggacag
ggagagagccgtagctatggtagtcaggataccggttggcgcttcccggctttgagtaga
gagcaggcgcgggaattcctggcagtgatggtcgacgggtatcaacagggaatgaataag
cctctgttattgcttaatcggtcaggtagtgcctggttgacggaagtttatgatcgcgaa
gctgaccgtctgtcgtcagatgaagatattcggcaaaaagcccggctcaaactgctggat
gcctggcagggaaaccggatgatattgggcgaaggggaggattattacctccagcggatt
atccgtatcatggacagtgaacgggtcgagcaggttattgatgcggcgcaaacctggctg
ttaccaccggtgcgttttaatcagtacggcaagaaagtgagtatatccacgtga
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