Prodigiosinella confusarubida ATCC 39006: CWC46_22025
Help
Entry
CWC46_22025 CDS
T05968
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CWC46_22025 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serq03019
]
CWC46_22025 (pnp)
03016 Transfer RNA biogenesis [BR:
serq03016
]
CWC46_22025 (pnp)
Enzymes [BR:
serq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CWC46_22025 (pnp)
Messenger RNA biogenesis [BR:
serq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CWC46_22025 (pnp)
Transfer RNA biogenesis [BR:
serq03016
]
Prokaryotic type
tRNA degradation factors
CWC46_22025 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
OB_PDCD11
S1_RRP5
aRib
KH-I_KHDC4-BBP
Spt6_S1
KH_SLS1_2
UPF0181
Motif
Other DBs
NCBI-ProteinID:
AUH02231
UniProt:
A0A2I5TPR3
LinkDB
All DBs
Position
complement(4824745..4826868)
Genome browser
AA seq
707 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKHAKPGQDFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLISRLIDRPIRPLFPDGFVNEVQVIATVVSV
NPQVSPDIVAMIGASAALSLSGIPFNGPIGVARVGYINDQYVLNPTIDELKESRLDLVVA
GTQGAVLMVESEADLLSEDQMLGAVVFGHDQQQVVIENIKALVAEAGKPKWDWSSPKVNA
ALQSRVQALSEARLGDAYRIIEKQERYAQVDAIKAEVTAVLLAEDATLDEDEIRDILGSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQNIDELTGERTDRFMLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKASE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDSYVVLSD
ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISIPRGEISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DSEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEANAQPQESVSVSGEEE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgtacgtaaattccaatatggtcaacacactgtcactctggaaaca
gggatgatggcgcgtcaggctactgctgctgttatggttagtatggatgacactgcagta
tttgtgacggtagtgggtgctaaacacgctaaacctggtcaggactttttcccgctaact
gtcaactatcaggagcgtacttacgctgctggccgtatcccgggtggttttttccgtcga
gaaggtcgtccgagtgaaggcgaaaccctgatctcccgcctgattgaccgtcctattcgt
ccgctgttcccagatggttttgtgaacgaagttcaggttattgccacggtggtgtcggtg
aatccgcaagtaagcccggatatcgttgccatgatcggtgcttctgctgcgttgagcctg
tctggtattccgttcaatggtcctatcggtgtcgctcgtgttggttatatcaacgaccag
tatgtgctgaacccgactattgatgaactgaaagaaagtcgtctggatctggttgtggcc
ggtacccagggggctgtactgatggttgaatccgaagctgacttattaagtgaagatcag
atgttgggtgccgttgtctttggtcatgaccagcagcaggtagttattgagaacatcaag
gcgctggttgctgaagcaggtaaaccgaaatgggactggtcgtctccgaaagtgaatgct
gcattgcagagtcgtgtacaggcgctgtctgaagcccgtttaggtgatgcttatcgcatt
attgaaaagcaagagcgttacgcacaggttgatgctatcaaagctgaagttactgcggtg
ttattggcagaagatgctacgctggatgaagatgaaatccgcgacattttgggcagcatt
gagaaaaatgtggttcgtagtcgagtgttacgtggtgaaccgcgtattgatggtcgtgaa
aaagacatgatccgtggtctggatgtgcgtaccggtgtgttgccgcgtactcatggttct
gctctgtttacccgtggtgagacacaagcgttggtgaccgctacattgggtactgagcgt
gatgctcagaatattgatgaactgaccggtgaacgcactgatcgtttcatgttgcactac
aatttccctccgtattccgtaggtgagactggtatggtcggatcaccgaagcgtcgtgag
atcggtcatggccgtctggcaaaacgtggtgttctggctgttatgccgaaagcgagtgaa
ttcccgtataccgtgcgtgtggtatccgaaattaccgaatctaatggctcctcttctatg
gcgtctgtttgtggtgcctctttggcattgatggatgctggtgtgccgattaaagccgct
gtagcgggtatcgctatgggattggtaaaagaaggcgacagttatgttgtcttgtccgat
attcttggtgacgaagaccacttgggcgatatggactttaaagtggctggtagccgtgat
ggtgtaaccgcgctgcagatggacatcaagattgaaggcattacccgtgaaatcatgcaa
gttgcgctgaatcaggcaaaaggtgcccgtttgcatattctgggtgtgatggagcaagca
atcagcataccgcgtggtgaaatctctgagttcgcaccgcgtattcatacgatcaagatc
agtactgacaagatcaaggatgttattggtaaaggcggttctgttatccgtgcattgacc
gaagagactggcactaccatcgaaattgaagatgacggtacagtgaaaatcgcgtcaacg
gatagcgagaaggcaaaacatgccattcgccgtatcgaagagattaccgctgagattgaa
gtcggtcggatttatcaaggtaaagtgacccgtattgtagactttggtgctttcgtagct
atcggtggtggtaaagaaggtttggtacacatttctcaaatcgctgataagcgtgttgag
aaagtgactgattatctgcaaatgggtcaggaagttccggttaaagtactggaagttgat
cgccagggacgagttcgtctgagcattaaagaagccaatgcccagcctcaggaatcggtt
tccgtttccggggaagaagaataa
DBGET
integrated database retrieval system
