Prodigiosinella confusarubida ATCC 39006: CWC46_22215
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Entry
CWC46_22215 CDS
T05968
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
serq
Prodigiosinella confusarubida ATCC 39006
Pathway
serq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
serq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CWC46_22215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serq03021
]
CWC46_22215
Transcription machinery [BR:
serq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CWC46_22215
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
Sas-6-like_oligomerization
Motif
Other DBs
NCBI-ProteinID:
AUH02265
UniProt:
A0A2I5TCJ2
LinkDB
All DBs
Position
4860460..4862286
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AA seq
608 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAISYLLEQYDRVEAGESRLSDLITGFVDPNAEENLAPTATH
VGSELSSDEIDDDEDEDDDEEEDDNSIDPELARQKFAELREQHETTRKAIKAHGRSHPSA
GAEILNLSEVFKQFRLVPKQFDLLVNSMRSMMDRVRTQERLIMKLCVEQSKMPKKNFVTL
FSGNETNNKWFAAAMAMGKPWSEKLHDVKEDVQRGLQKLHMIEEETGLTIEQMKDINRRM
SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAE
RMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATH
DVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE
VLRSFLDD
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagctacttgtcacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactccgaccag
atcgaagacatcatccagatgattaatgacatgggcatccaggtgatggaagaagcaccg
gatgcagatgatcttatgttagccgaaaacactgctgacgaagatgcagcggaggctgca
gcacaagtgttatccagcgttgaatccgagattggacgtactaccgatccggtgcgtatg
tacatgcgtgaaatgggtaccgttgaactcttgacacgtgaaggtgaaatcgatattgcc
aaacgtattgaagacggtatcaatcaggtacagtgctccgttgctgagtaccctgaagcc
atcagctatttactggagcaatacgatcgtgttgaagcaggtgaaagccgtttatcagat
ttgatcactggctttgtcgatccaaacgcggaagaaaacctggcaccaacggcaacacat
gttggttctgagctttccagcgatgagatagatgacgacgaagacgaggatgatgacgaa
gaggaggacgataacagcattgaccctgagctggcccgtcagaaattcgccgaactgcgt
gagcagcatgagacgacccggaaggcaatcaaagcccacggacgcagtcatccaagtgct
ggtgcggaaattctgaatctgtctgaagttttcaaacaatttcgattggtaccaaaacag
tttgacctgctggtcaacagcatgcgttcaatgatggatcgtgtgcgtacgcaagaacgc
ttgatcatgaagctgtgcgttgagcaaagcaaaatgccgaagaaaaacttcgtcacactg
ttctccggcaatgaaaccaacaataaatggtttgcagccgcgatggcaatgggtaaaccc
tggtccgaaaaactgcacgacgtgaaagaagatgtacagcgcggcttgcagaaacttcat
atgattgaagaagaaaccgggctgaccattgaacaaatgaaagacatcaaccgcaggatg
tccattggtgaagcgaaagcccgtcgtgcaaaaaaagaaatggtggaggcaaacttgcgt
ctggttatttctatcgccaagaaatacaccaatcgtggcctacagttccttgacctgatt
caggaaggaaatatcggtctgatgaaagccgtagataagtttgaatatcgtcgtggttat
aaattttcaacttatgctacctggtggatccgtcaggcgatcactcgttctattgcggat
caagcgcggactatccgtattccggtacatatgattgaaaccatcaacaaactcaatcgt
atttcacgccagatgctgcaagaaatgggtcgtgaacccactccggaagaactggctgaa
cgtatgctgatgccggaagacaagatccgcaaagtactgaaaatcgctaaagagccaatt
tcgatggaaacaccgattggtgatgatgaagattcacatcttggggatttcattgaggat
accacgctggaattgccgctggattccgcaacctctgaaagtctgcgttcagcgacacat
gatgtgctggccggcctgacagcccgagaagcgaaagtattgcgcatgcgctttggtatt
gatatgaacaccgaccacacattggaagaagtgggtaaacagtttgatgttacgcgtgaa
cgtattcgacagattgaagcgaaagcactgcgtaaactacgtcatcccagtcgttctgaa
gtactgcgcagttttctagatgattaa
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