Serratia sp. SCBI: SERRSCBI_00690
Help
Entry
SERRSCBI_00690 CDS
T03314
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sers
Serratia sp. SCBI
Pathway
sers03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERRSCBI_00690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sers03019
]
SERRSCBI_00690
Enzymes [BR:
sers01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SERRSCBI_00690
Messenger RNA biogenesis [BR:
sers03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SERRSCBI_00690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIM19777
LinkDB
All DBs
Position
complement(160707..161993)
Genome browser
AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYTKQNYVDLGAMQVVVLDEADRMYDLGFIKDIR
WLFRRMPAADQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGNLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIDHSIPVSKYNSDALLTDLPAPKRLSRPRGGNGPRRNSAPRRGGAP
RSNRKRSS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgactgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgagaaaaaagggtttcacaattgcacgcccatccaggcgttagcattg
ccgctcacgctctccgggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ctggcgtttttggcgtctacttttcactatttgctgacccacccggcgaaacaggatcgc
cagaccaatcagccgcgcgccttgatcatggcgcctacgcgtgaactggcggtgcaaatc
cactccgatgcggaagccctctcccagagcaccggcctgaagctgggcctggcctacggc
ggcgacggctacgacaaacagctgaaagtgctggaaagcggcgtggacattctgattggc
accaccggccgtttaatcgattacaccaagcagaactatgtcgatctcggcgcgatgcag
gtcgtcgtgctggatgaggccgatcgcatgtacgatctcggctttatcaaagacatccgc
tggctgttccgccgcatgcctgcggccgatcaacgcctgaacatgctgttctccgccacg
ctgtcctatcgcgtacgcgaactggccttcgagcagatgaacaacgccgaatatgttgaa
gtggaaccggaacagaaaaccggccaccgcattaaagaagagctgttctacccgtccaac
gaagaaaaaatgcgtctgctgcagacgctgatcgaagaagagtggccggatcgcgccatc
atcttcgccaacaccaagcaccgctgcgaagacatctggggccacctggccgccgacggt
caccgcgtcggcctgctgaccggcgacgtggcgcagaaaaaacgcctgcgcatcctcgac
gacttcaccaagggcaatctggatatcctggtcgccaccgacgtcgccgcgcgcggtctg
cacattcccgccgtcacgcacgtcttcaactacgatctgcctgacgactgcgaagactac
gtgcaccgcatcggccgtaccggccgagcaggcgccagcggccactccatcagcctggct
tgtgaagagtacgcgctcaacctgccggcgatcgagacctatatcgatcacagcattccg
gtgagcaagtacaacagcgatgcgctgctgaccgatctgccggcgccgaagcgcctgtcg
cgtccgcgcggcggcaacggcccacgtcgcaactccgcgccacgtcgcggcggcgcgccg
cgcagcaaccgtaaacgctcgagctga
DBGET
integrated database retrieval system
