Serratia sp. SCBI: SERRSCBI_00700
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Entry
SERRSCBI_00700 CDS
T03314
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sers
Serratia sp. SCBI
Pathway
sers03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERRSCBI_00700 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sers03021
]
SERRSCBI_00700 (rho)
03019 Messenger RNA biogenesis [BR:
sers03019
]
SERRSCBI_00700 (rho)
Transcription machinery [BR:
sers03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SERRSCBI_00700 (rho)
Messenger RNA biogenesis [BR:
sers03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SERRSCBI_00700 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA_25
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AIM19779
LinkDB
All DBs
Position
162852..164111
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgcatgcgcaagcaggacatcatcttctccattctgaag
caacatgcgaaaagcggagaagatatcttcggcgacggcgtgctcgagatattgcaggat
ggattcggtttcctccgctctggagacagttcctacctcgccggtcccgacgacatctac
gtatcccctagccaaatccgccgcttcaacctccgcacaggtgacaccatttccggtaag
attcgtccgccaaaagaaggcgagcgctattttgccctgctgaaagtcaacgaagtcaac
tacgacaagccggaaaacgcccgcagcaagatcctgttcgagaacttgacgccgctgcac
gccaattcccgtctgcggatggagcgcggcaacggctcgaccgaagacttgacggcgcgc
gtactggatctggcggcgccaattggccgcggccagcgtggcctgatcgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaacatcgcgcagagcatcgcctacaatcaccca
gactgcgtgctgatggtgctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgcctggtgaaaggcgaagtgatcgcatcgaccttcgacgagccggcttcgcgtcacgtg
caagtggctgaaatggtgatcgagaaggccaagcgcctggttgagcacaagaaagacgtg
atcattctgctcgactccatcactcgtctggcgcgcgcctacaacactgtggtgccggcc
tcgggcaaggtgttgaccggtggtgtggacgccaacgccctgcatcgtccgaagcgcttc
ttcggtgcggcgcgtaacgtggaagagggcggcagcctgaccatcatcgcgaccgcgctg
gttgataccggttcgaagatggacgaagtgatctacgaagaatttaaaggtaccggcaac
atggaattgcatctggcgcgtaaaatcgccgagaaacgcgtattcccggctatcgattac
aaccgctccggtacccgtaaagaagagctgctcaccacctctgaagagctgcaaaaaatg
tggatcctgcgcaaaatcattcatccgatgggtgaaatcgacgcgatggagttcctcatt
aataagttggcgatgactaaaaccaacgatgaattcttcgatatgatgaaacgctcataa
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