Serratia sp. SCBI: SERRSCBI_00850
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Entry
SERRSCBI_00850 CDS
T03314
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sers
Serratia sp. SCBI
Pathway
sers03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERRSCBI_00850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sers03019
]
SERRSCBI_00850
03400 DNA repair and recombination proteins [BR:
sers03400
]
SERRSCBI_00850
Enzymes [BR:
sers01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SERRSCBI_00850
Messenger RNA biogenesis [BR:
sers03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SERRSCBI_00850
DNA repair and recombination proteins [BR:
sers03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SERRSCBI_00850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
DUF6972
Motif
Other DBs
NCBI-ProteinID:
AIM19809
LinkDB
All DBs
Position
197168..199000
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQTIINAAIGGQDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLLAYGVSAACYNSTQTREEQLDVMAGCRNGTIKMLY
IAPERLMMESFLNLLDHCPPAMLAVDEAHCISQWGHDFRPEYRALGQLKQRFPSMPVIAL
TATADKATRGDIVRLLSLQDPLVQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKPAGQQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKHENCGNCDICLDPPKRYDGLEDARKAL
SCVYRVGQRFGLGYIVEVLRGSNNQRIREYGHDKLPVYGIGRDQTTEHWTSVLRQLIHLG
FITQNIAMHSALQLTEAARPVLRGEVALQLAVPRIQSLKSRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAM
IRDHLDNDED
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgattaacagagagttgctggccgagcaggtattgcgcgatacc
ttcggctaccagcaattccgtccggggcagcaaacgattatcaatgccgcgatcggcggg
caggattgcctggtggtgatgccgaccggcggcggcaagtcgttgtgttaccaaatccct
gcgctggtgatggacggcctgacgctggtcgtttctccgctgatctcgctgatgaaggat
caggtcgaccaactgttggcctacggcgtttccgccgcctgctacaactcgacgcaaacc
cgcgaggagcagctggacgtcatggccggctgccgcaacggcaccatcaagatgctgtac
atcgcaccggagcggctgatgatggaaagcttcctcaacctgctcgatcactgcccgccg
gcgatgctggcggtggatgaggcgcactgcatctcccaatggggccacgacttccggccg
gaataccgcgcgctgggtcagttgaaacagcgcttcccgtcgatgccggtgatcgcgttg
accgccactgccgacaaagccacacgcggcgatatcgtgcgtctgctgtcgctgcaggat
ccgctggtgcaggtcagcagcttcgaccggccgaacatccgctacacgctggtggaaaaa
ttcaaaccgctcgaccagctgtggcgcttcgtgcaggatcagcgcggcaagagcggcatt
atctattgcaacagccgcgccaaggtggaagacaccgccgcgcgcctgcaaagccgcggg
ctgagcgtcggcgcttaccacgcggggctggacaacgatcgccgcgcccaagtgcaggaa
gcgttccagcgtgacgatctgcaggtggtggtggccaccgtcgccttcggcatgggcatc
aacaaacccaacgtgcgttttgtggtgcatttcgacatcccgcgcaatatcgaatcctat
tatcaggagaccggccgcgccgggcgcgacggcctgccggccgaagccatcctgctgtac
gatccggccgacatggcctggctgcgccgctgtctggaggagaaacccgccgggcaacag
ctggacatcgagcgtcacaagctgaacgccatgggcgctttcgccgaggctcaaacctgc
cgtcgcctggtgctgctcaactacttcggcgaaggcaagcacgaaaactgcggcaactgc
gatatctgcctcgatccgcccaagcgctacgacgggctggaggacgcgcgcaaggcgctg
tcttgcgtgtaccgcgtcggccagcgcttcggcctcgggtacatcgtggaagtgctgcgc
ggctccaacaatcagcgcattcgcgaatacggtcacgacaagctgccggtgtacggcatc
ggccgcgatcaaaccacggagcactggaccagcgtgctgcgccagctgatccacctgggc
tttatcacccagaacatcgccatgcactcggcgctgcaattaaccgaggcggcgcgtccg
gtgttgcgcggcgaggtggcgctgcagctggcggtgccgcgcattcagagcctgaagtcg
cgcagcagcgccaaccagaaatcctacggcggcaattacgatcgcaagctgttcgccaag
ctgcgcaaactgcgcaagtcgatcgccgacgaagaaaacattccaccctacgtggtgttc
aacgacgccacgctgctggaaatggccgaacagatgccgatcaaggccggcgatctgctg
agcgtcaacggcgtggggcagcgcaaactggagcgcttcggcgcgccctttatggcgatg
atccgcgaccatctcgacaatgacgaagactga
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