Serratia sp. SCBI: SERRSCBI_01730
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Entry
SERRSCBI_01730 CDS
T03314
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sers
Serratia sp. SCBI
Pathway
sers03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SERRSCBI_01730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sers03019
]
SERRSCBI_01730
03016 Transfer RNA biogenesis [BR:
sers03016
]
SERRSCBI_01730
Enzymes [BR:
sers01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SERRSCBI_01730
Messenger RNA biogenesis [BR:
sers03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SERRSCBI_01730
Transfer RNA biogenesis [BR:
sers03016
]
Prokaryotic type
tRNA degradation factors
SERRSCBI_01730
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AIM19985
LinkDB
All DBs
Position
407205..409679
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AA seq
824 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREYILAHLAKRETPASREELGNELGLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH
GDVVLAQALGADRKGRREARIVRVLVPKTSQIVGRFFMDAGTGFVVPDDSRLSFDILIPA
DSVSGARMGYMVVVELTQRPTRRTKAVGKIVEILGDKMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLSEQVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSTAKFYEAVMSSHARLTYNKVWHILQGDQELREHYHPLVKHLEELHAMYKVLDKA
RAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMIMANVAAARFVEKRNEP
ALYRVHDRPSDDHISALRSVLSELGLTLGGGNKPQPKDYAVLMDEVSERPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALASYGHFTSPIRRYPDLALHRAIKYQLAKEHGEPKERWTPT
GGWHSEFEEMLQLGEHCSMTERRADEATRNVADWLKCDFMQDHVGEVFSGIISSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESSGTVYRLGDTVEIRVDAVHMDERK
IDFALVSSTRKARGEGKTERDRAKKGGQRTLRDSGNAGRGKRRGGKPPANFEPDSAFRKQ
DDAKPADNVKKAKKKAKKASDKTRKIAAATKAKRAAKKKGAEQA
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatctcccattcccagc
cgtgaatatatcctggcccatttggcgaaacgagaaacgccggccagccgcgaagaactg
ggcaacgaattgggcctcagcggcgaagaacagctggaagcgctgcgccgccgcctgcgc
gccatggagcgcgatggccagttagtgtttacccgccgccagtgctacgcgctgccggaa
cgtttggacctgctgcgcggcacggtgattggccaccgcgacggctacggcttcctgcgc
gttgaaggcagcaaagacgatctgtacctgtccgccgaacagatgaaaatggcgatccac
ggtgacgtggtgctggcgcaggcgctgggcgcggatcgcaaagggcgtcgcgaagcgcgc
atcgtgcgcgtgctggtgccgaaaaccagccagatcgtcggccgcttcttcatggatgcc
ggtaccggcttcgtggtgccggacgacagccgtctgagcttcgatattctgatcccggcg
gacagcgtcagcggcgcgcgcatgggctacatggtggtggtggagctgactcagcgcccg
acccgccgcaccaaagcggtcggcaagatcgtcgagatcctcggcgacaaaatgggcacc
agcatggcggtggatatcgcgctgcgcacccatgagatcccgcatacctggccgccgcag
gtggaaaagcaggtggccgatctcagcgaacaggtgccggaagcggccaagaagggccgc
gtcgatctgcgcaagctgccgttggtcaccatcgacggtgaagacgcgcgcgacttcgat
gatgccgtgtactgcgagaaaaaacgcggcggcggctggcgcctgtgggtagcgatcgcc
gacgtcagctactatgtgcgtccacgcaccgcgctggacgacgaagcgcgcagccgcggc
aactcggtgtatttcccgtcgcaggtgatcccgatgctgccggaagtgctgtccaacggg
ctgtgctccctgaacccgcaggtcgatcgcctgtgcatggtgtgcgagatgaccatctcc
gcccaagggcgcctgtccacggccaagttctacgaggcggtgatgagctcccacgcccgc
ctgacctacaacaaggtgtggcacattctgcagggcgatcaggagctgcgcgagcattac
cacccgctggtcaagcacctggaagagctgcacgccatgtacaaggtgctggataaggcg
cgcgccgagcgcggcggcatcgcgtttgaaaccgaagaagccaaattcatcttcaacgcc
gaacgccgcatcgagcgcgtggagccgacggtgcgcaacgacgcccacaagctgatcgaa
gagtgcatgatcatggccaacgtggcggccgcgcgcttcgtcgagaaacgtaacgagccg
gcgctgtaccgcgtgcacgatcgtccgagcgatgaccacatctccgcgctgcgcagcgtg
ctgagcgagctggggctgacgctgggcggcggcaacaagccgcagccgaaggactatgcg
gtgctgatggatgaagtgtccgagcgccctgaccacgaaatgctgcaaaccatgttgctg
cgctcgatgaagcaggcgatttacgatccggaaaaccgcggccacttcggcctggcgctg
gcctcttacggccacttcacctcgccgatccgccgttatccggatctggcgttgcaccgc
gcgatcaaataccagctggccaaagagcatggcgagccgaaagagcgctggacgccgacc
ggcggctggcacagcgaattcgaagagatgctgcagctgggcgaacactgttcgatgacc
gagcgccgcgcggacgaagcgacgcgcaacgtcgccgactggctgaagtgcgacttcatg
caggatcacgtcggtgaagtgttcagcggcataatctccagcgtgaccggcttcggcttc
ttcgtgcgcctgaacgatctgttcatcgacgggctggtgcacgtatcaacgctggataat
gattactatcgctacgataatatcggccagcgcctgatcggcgagtcttccggcacggtc
tatcgcctgggggatacggtggagatccgcgtggatgcggtgcatatggacgagcgcaag
atcgacttcgcgctggtgtccagcacccgcaaagcgcgcggtgaaggcaaaaccgagcgc
gatcgcgccaagaagggcggccaacgcacgctgcgcgacagcggcaatgcggggcgcggc
aagcgccgcggcggcaaaccgccggccaacttcgagccggacagcgccttccgtaagcag
gatgacgccaagcccgcggacaacgtgaagaaggcgaaaaagaaagccaagaaagcgtcc
gacaaaacgcggaaaatcgcggcggcgaccaaagccaaacgcgcagccaagaagaaaggt
gccgagcaggcttaa
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