Serratia sp. SCBI: SERRSCBI_12185
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Entry
SERRSCBI_12185 CDS
T03314
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sers
Serratia sp. SCBI
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sers03019
]
SERRSCBI_12185
Enzymes [BR:
sers01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SERRSCBI_12185
Messenger RNA biogenesis [BR:
sers03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SERRSCBI_12185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
AAA_16
SLFN-g3_helicase
AAA_23
HALZ
Motif
Other DBs
NCBI-ProteinID:
AIM22037
LinkDB
All DBs
Position
complement(2622818..2626660)
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDQQRLRRRLQGARKIKNPDAQLAVAAEVENDIATARQKVQARAASCPRITYPESLPV
SQKKQDILNAVRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVA
NRIADELETPLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNAPIIEVSGRTYPVEVR
YRPVVDDGDDTDRDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNRLNLPHTE
VLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSFRTK
VQRLPIEPVSQASANQRKGRCGRVSEGVCIRLYSEQDFLSRPAFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTADNGHYQLTPQGRQLAQLPIDP
RLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKHRRFADKDSDFLAFVN
LWDYLQEQQKANSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVVKELGLPINSTPSDYR
SVHTALLTGLLSHIGQKDADKQEYTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRLW
GRIAARIEPEWIEPLAQHLVKHSYSEPHWSKSQGAVMASEKVTLFGLPIVAARQVNYGAI
DPLLCRELFIRHALVEGDWQTRHAFFRDNQKLRAEVEELEHKSRRRDILVDDETLFGFYD
RRIPNDVVSGRHFDSWWKTAAKQQPDLLNFEKEMLIKDGANKISALDYPNFWHQGNLKLR
LSYQFEPGTDADGVTVHIPLPILNQVEEQGFEWQIPGIRRELVIALIKSLPKPVRRNFVP
APNYAEAFLGRVTALELPLLDALERELRRMTGVTVSRDDWQWDQVPDHLKMTFRVVGEKN
QTLREGKDLAALRLQLKEKVQETLSAVADDGLEQSNLHVWSFGQLPAFYEQKRGGYSMKA
YPALVDEKDSVAIRLFDSESEQQQAMWQGTRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLELIDDCISCGIDKLIAEHGGPVWQEEDFARLQEQIRAELNDTVVEVAKQVEQIL
TAVFNINKRLKGRVDMSLALALSDIKTQLGGLVYRGFVTGNGWKRLPDTLRYLQAIERRL
EKLAIDPHRDRAQMLRVEQVQQAWQQWLNKLPPKRQQEEEVKAVRWMIEELRVSLFAQQL
GTPYPISDKRILQTIEQLSG
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctccgcgatcaacaacgcctgcgtcgtcgcctgcagggcgcacgaaaaatcaaaaat
cccgatgcccagctggcggtcgccgccgaagtggaaaacgacatcgcgacggcgcggcaa
aaagtgcaggcgcgcgccgcgtcttgcccgcgcattacctatccggaaagcctgccggtc
agccagaaaaagcaggacatcttaaacgctgtccgcgaccaccaggtggtgatcgtcgcc
ggggagacaggctcggggaaaaccacccagttgccgaagatctgtctggagctggggcgt
ggggtgaaagggctgatcggccatacccagccgcgccgcctggcggcgcgcaccgtcgcc
aaccgcatcgccgacgagctggaaaccccgctcggcggcagcgtgggctacaaggtgcgc
ttcaatgatcaggtaggggaaaacaccctggtcaagctgatgaccgacggcattttgctg
gcggagattcagcaggatcgcctgctgatgcagtacgacacgctgatcatcgatgaagcg
cacgagcgcagcctgaatatcgactttattcttggttacctgcgcgaactgctgccgaag
cgcccggatctcaaggtgatcatcacctcggcgaccatcgatccgcagcgtttctcgcgc
cacttcaacaatgcgccgatcatcgaggtttccggccgcacctacccggtggaggtgcgc
taccgcccggtggtcgacgacggcgacgataccgatcgcgaccagctgcaggcgattttc
gatgcggtggacgagcttgggcgcgaagggccgggcgacattctgatcttcatgagcggc
gagcgtgagatccgcgataccgccgacgctttgaaccgcctcaatttgccgcacaccgag
gtgctgccgctgtatgcgcgcctgtcgaacagcgagcagaaccgggtgttccagtcgcac
cacggccgccgcatcgtgctggccaccaacgtggcggaaacctcgctgacggtgccgggc
atcaaatacgtcatcgatccgggcaccgcgcgcatcagccgctacagcttccgcaccaag
gtgcagcgcctgccgatcgagccggtgtcacaggcctccgccaatcagcgtaaagggcgc
tgcggccgcgtgtcggagggggtgtgcatccgtctgtactccgaacaggatttcctctcg
cggccggcgtttaccgatccggaaattctgcgcaccaacctggcgtcggtcattctgcag
atgacctcgctggggctgggcgacatcgccgcgtttccgttcgtcgaggcgccggacaaa
cgcaacattcaagatggcgtgcgcctgctggaagagctgggggcgatcaccaccgccgat
aacggccactatcagctgacgccgcagggccggcagctggcgcagttgccgatcgacccg
cgtctggcgcgcatggtgctggaagctcagaagagcggcagcgtgcgcgaggtgatgatc
atcaccgccgcgctgtcgattcaggatccgcgtgagcgcccgatggacaagcagcaggcc
tcggatgaaaaacaccgccgcttcgccgacaaggactcggacttcctggcgttcgtcaac
ctgtgggattatctgcaggagcagcaaaaggcgaactcctccagccagttccgccggctg
tgccgcaacgattttctcaactacctgcgggtgcgcgagtggcaggatatctatacccag
ctgcgccaggtggtgaaagagctggggctgccgatcaacagcacgccttccgactaccgc
agcgtccacaccgcgctgctgaccggcctgttgtcgcacatcggccagaaggatgcggac
aaacaggaatacaccggcgcgcgcaacgcccgcttctcgatcttccccggctccggcctg
ttcaagaagccgccgaagtggaccatggtggccgaactggtggaaaccagccgcctgtgg
gggcgcatcgccgcgcgcatcgaaccggaatggatcgagccgctggctcagcacctggtg
aaacacagctacagcgaaccgcattggtcgaagtcgcagggggcggtgatggccagcgaa
aaggtcacgttgttcggtctgccgatcgtcgcggcgcgtcaggtcaattacggcgccatt
gatccgctgctgtgccgcgagctgtttatccgccatgcgctggtcgagggtgactggcag
acgcgccatgctttcttccgcgataaccaaaagctgcgcgccgaagtggaagagctggag
cataaatcgcgtcgccgcgacattctggtggacgacgaaacgctattcggcttctacgat
cgccgcatccccaacgacgtggtgtccggccgtcatttcgacagctggtggaagaccgcc
gccaaacagcagcccgacctgctgaacttcgaaaaagagatgctgatcaaggatggcgcc
aacaagatcagcgcgctggattacccgaacttctggcatcagggcaacctcaaactgcgg
ctgagctatcagttcgaaccagggaccgacgccgacggcgtgacggtgcacatcccgctg
ccgatcctcaatcaggtggaggagcaggggtttgaatggcagatccccggcatccgccgt
gagctggtgatcgcgctgatcaaatcgttgccgaaaccggtgcgtcgcaacttcgtgccg
gcgccgaactacgccgaagcgttccttggccgcgtaacggcgctggaattgccgctgctt
gacgcgctggagcgcgagttgcggcgtatgactggcgtgaccgtgtcacgtgatgactgg
cagtgggatcaggtgcccgatcacctgaaaatgactttccgcgtggtgggcgagaaaaac
cagacgctgcgcgaaggcaaagatctggccgccctgcgcctgcagttgaaagagaaggta
caggagacgctgtcggcggtggccgatgacggactggagcagagcaacctgcatgtctgg
agctttggccaattgccggcgttctacgagcagaagcgcggcggctattcgatgaaagcc
tatccggcgctggtggatgaaaaggacagcgtggcgatccgcctgttcgacagcgaaagc
gaacagcaacaggcgatgtggcagggcacgcgccgcctgctgttgttgaatattccttcg
ccgatcaaatatctgcatgaaaagctgccgaacaaggccaagctggggctttatttcaac
ccgtacggcaaggtgctggagctgatcgacgactgcatttcgtgcggcatcgacaaactg
atcgccgaacacggcggcccggtttggcaggaggaagactttgcccggttacaggagcag
atccgcgccgagctgaacgacacggtcgttgaggtggccaagcaggttgaacagatcctg
acggcggtcttcaacatcaacaaacggctgaaaggccgggtggacatgtcgttggcgctg
gcgctgtcggacatcaagacccagctcggcgggctggtctaccgcggcttcgtcaccggc
aatggatggaaacggctgccggacacgctgcgctacctgcaggcgatcgaacgccgattg
gagaaactggctatcgatccgcaccgcgatcgcgcgcagatgctgcgggtggagcaggtg
cagcaggcgtggcagcagtggctgaacaagctgccgccgaagcgacagcaggaggaagag
gtgaaagcggtgcgctggatgattgaagaactgcgcgtcagcctgttcgcgcagcagctg
ggcacaccttacccgatctccgacaagcgcattctgcaaaccatcgaacagctttcgggc
taa
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