Serratia sp. SCBI: SERRSCBI_12415
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Entry
SERRSCBI_12415 CDS
T03314
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sers
Serratia sp. SCBI
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sers03016
]
SERRSCBI_12415
Enzymes [BR:
sers01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SERRSCBI_12415
Transfer RNA biogenesis [BR:
sers03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SERRSCBI_12415
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AIM22083
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All DBs
Position
2674966..2676900
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
IATLHTEKEREIAEPETLVEPFLSRFVGRVQKRDDRLSIVPDHPLLKDAIPCRPARELTH
NFQAGDWAVAEMRRHPLKGDRGFNADLTQFITDGEDHFAPWWVTLARHNLEKEAPEMQAL
SEPDAALVREDLTALEFVTIDSASTEDMDDALYVTDNGDGSLQLTIAIADPTAYVEQGSK
LDDIARVRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRQVLACRVTIAADGALGEDIQF
FAAEIESKAKLVYDEVSDWLDGIAGWQPPSDAIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGDVLEIVTEQRRSANRIVEECMIAANVCAAIVLRDRLGFGVYNVHTGFD
PALVEQAVTVLQANGVEAEAEKLLTLDGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIINQQPAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MQCSQETGTVQIKGEVVYRQSDTLQVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcactctcagaccccg
cgcgttgaaggcgtagtgaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagctacttcattccgccgccgtacatgaagaaagtcatgcacggggatcgcatt
atcgccaccctgcacaccgagaaagagcgcgaaatcgccgagccggaaaccctggtcgag
ccgttcctgtcacgctttgtcggccgcgtgcaaaagcgcgacgatcgtctgtccatcgtg
cccgatcatccgttgctgaaagacgcgattccgtgccgcccggcgcgtgaactgacccac
aacttccaggccggcgactgggcggtggcggaaatgcgccgccatccgctgaaaggcgat
cgcggcttcaacgccgacctgacccagtttatcaccgacggtgaagaccatttcgccccg
tggtgggtgacgctggcgcgtcacaacctggaaaaagaggcgccggagatgcaggccctc
agcgagccggacgctgcgctggtgcgtgaagatctgaccgcgctcgaattcgtcaccatc
gacagcgccagcaccgaagacatggacgatgcgctgtacgtgaccgacaacggtgacggt
tcgctgcagttgaccatcgccatcgccgatcctactgcctacgtagaacaaggcagcaag
ctggacgacatcgcccgcgtgcgcgccttcaccaactatctgccgggcttcaacatcccg
atgctgccgcgcgatctgtcggacaacctgtgctcgctgcgccctaacgagcgccgtcag
gtgctggcttgccgcgtgaccatcgccgccgacggcgcgctgggcgaagatattcagttc
ttcgccgccgagatcgaatccaaagccaaactggtgtacgacgaagtctccgactggctg
gacggcattgccggctggcaaccgccgagcgacgccatcgcgcaacagatcaccctgctg
aaacgcgtttgcgacgcgcgcaacgcctggcgccaccagcatgcgctggtattcaaagat
cgcccggactaccgcttcgtgctgggtgaaaaaggcgacgtgctggagatcgttaccgag
cagcgccgcagcgccaaccgcatcgttgaagagtgcatgatcgccgccaacgtctgcgcc
gccatcgtgctgcgtgatcgcctgggcttcggcgtgtacaacgtgcacaccggtttcgat
cctgcgctggttgagcaagcggtcaccgtactgcaggccaacggcgtcgaagccgaagcc
gagaagctgctgaccctcgacggtttctgcgaactgcgccgccacctggatgcgcagccg
acccagttcctcgacagccgcatccgccgcttccagaccttcgccgagatcagcactacg
ccggggccacacttcggtctggggctggaggcttacgccacctggacatcgccgatccgt
aaatacggcgatatggtcaaccatcgcctgctgaaggcgatcatcaaccagcagccggcg
gaaaaaccgcaggatgacgtgacggtgcagctggcggaacgccgccgtctgaatcgcatg
gcggaacgcgacgtcggcgactggctgtacgcccgtttcctgcaggacaaggccggtacc
gatacccgcttcaacgccgagatcatcgacgtgacacgcggcggcctgcgcgtgcgcctg
ctggacaacggcgcggttgccttcatcccggcgccgttcattcacgcggtgcgtgacgag
atgcagtgcagccaggaaaccggcaccgtgcagatcaaaggcgaagtggtttatcgccag
agcgataccttgcaggtcaccatcgccgaagtgcgcatggaaacccgcagcgtaatcgcc
cggccggcggcctga
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