Serratia sp. SCBI: SERRSCBI_12515
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Entry
SERRSCBI_12515 CDS
T03314
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sers
Serratia sp. SCBI
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sers03032
]
SERRSCBI_12515
03400 DNA repair and recombination proteins [BR:
sers03400
]
SERRSCBI_12515
Enzymes [BR:
sers01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SERRSCBI_12515
DNA replication proteins [BR:
sers03032
]
Prokaryotic type
DNA Topoisomerases
SERRSCBI_12515
DNA repair and recombination proteins [BR:
sers03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SERRSCBI_12515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AIM22103
LinkDB
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Position
complement(2698074..2700671)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSASKKSADSTEDKAKKKVK
KDEKAALVNRMGVDPYHGWKAHYEILPGKEKVVAELKSLAENADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIQQAFKQPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEYWELHADLLAKGDTALQMEVTH
AHDKPFKPVNREQTHAAVKLLEKARYTVLDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALNMVRGYIGDNFGDKYLPKAPNQYSSKEN
SQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVKAGDY
QLRAKGRTLRFDGWTKVMPALRKGDEDRTLPFVEIGSELDLQKLIPSQHFTKPPARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMEDGLDEVANNQAEWKAVLDEFFVDFSEQLETAEKDPEEGGMRPNQMVMTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPEAEVLNILEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRLKGYDGPVVECDKCGSEMHL
KMGRFGKYMGCTNENCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKDRLPEKLRYLADAPVADAEGNKTLVRFSRKTKQQYV
SSEKDGKATGWSAFYVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatat
ttaggaagtgactacgtggtgaagtccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagccagcaaaaagagcgctgactcaaccgaagacaaagccaagaaaaaagttaaa
aaagatgagaaggcggcgctggtaaatcgcatgggcgtcgacccttaccacggctggaaa
gcgcattatgaaatcctgccgggtaaagaaaaagtggtcgccgagttaaaatcgttggcg
gaaaacgccgaccacatttatctcgcaaccgaccttgaccgcgaaggggaagccatcgcc
tggcacctgcgggaagtgatcggtggggatgacaaacgctttagccgcgtggtgtttaac
gaaatcaccaaaaacgcgatccaacaggcgttcaaacagccgggcgagttgaacattgac
cgcgtcaacgcgcagcaggcgcgccggtttatggaccgcgtggtgggctatatggtctcg
ccgctgctgtggaaaaaaatcgcccgcggcctgtccgccggccgcgtgcagtcggtggcg
gtgcgcctggtggttgagcgtgagcgcgacatcaaggcgttcgtgccggaagagtactgg
gagctgcatgccgatctgctggcgaagggtgacaccgcgctgcagatggaagtgacccat
gcgcacgacaaaccgttcaagccggtcaaccgcgagcagacgcacgccgcggtcaagttg
ctggaaaaagcccgctacacggtgctggatcgcgaagacaaaccgaccagcagcaagccg
ggcgcgcctttcattacctccacgctgcaacaggccgccagcacccgcctgagcttcggc
gtgaagaaaaccatgatgatggcgcaacggctgtatgaagccggtcacatcacctatatg
cgtaccgactccaccaacctgagccaggatgcgctcaacatggtgcgtggctacatcggc
gacaacttcggcgataaatacctgccgaaggcgccgaatcagtacagcagcaaagagaat
tcacaggaagcgcacgaagccatccgtccttcggacgtgaacgtgctcgccgaacagctc
aaagacatggaagcggacgcgcagaagctgtatcagctgatctggcgtcagttcgtcgcc
tgtcagatgacgccggcgcaatacgattccaccacgctgacggtgaaagccggcgattat
cagctgcgcgccaagggccgtacgctgcgctttgacggctggaccaaggtgatgccggct
ctgcgcaaaggcgatgaagatcgcacgttgccgttcgtcgaaatcggcagcgagctggat
ctgcagaaactgatcccgagccagcacttcaccaagccgccggcgcgctacagcgaagcc
tcgctggtgaaagagctggagaaacgcggcatcggccgtccgtccacttacgcctccatc
atctcgaccattcaggatcgcggttatgtgcgggtggaaagccgccgtttctatgccgag
aaaatgggtgagatcgtcaccgatcgcctggaagaaaacttccgcgagctgatgaactat
gacttcaccgcgcgcatggaagacggcctcgatgaggtcgccaacaaccaggccgagtgg
aaagcggtgctggacgaattcttcgtcgacttcagcgagcagttggaaacggcggagaag
gatccggaagaaggcggcatgcggcctaaccagatggtgatgaccagcatcgactgcccg
acctgcggccgcaagatgggcatccgtaccgccagcactggggtcttcctcggctgttcc
ggctacgcgctgccgccgaaggaacgttgcaaaaccaccatcaacctggtgccggaagcg
gaagtgctcaacatcctcgaaggcgacgacgcggaaaccaacgcgctgcgcgcccgccgc
cgctgccagaaatgcggtacggcgatggacagctatctgatcgacaaccagcgcaagctg
cacgtctgcggtaacaacccggcgtgtgacggctatgagatagaagagggcgagttccgt
ctgaaaggctatgatggcccggtggtggagtgcgacaagtgcggctcggaaatgcacctg
aaaatggggcgtttcggcaagtacatgggctgcaccaacgagaactgcaaaaacacccgc
aagatcctgcgtaacggcgatgtcgcgccgccgaaggaagatccggtgccgttgccggag
ctgccgtgcgagaagtccgacgcctatttcgtgctgcgtgacggcgctgccggcgtgttc
ctggcggccaacaccttccctaaatcgcgcgagacccgtgcgccgctggtggaagaactg
gctcgcttcaaggatcgtctgccggagaaactacgctacctggccgatgcgccggtggcg
gatgccgaaggcaacaaaacgctggtgcgtttcagccgtaaaaccaagcagcagtacgtc
tcctctgaaaaagacggcaaggcgaccggttggtccgcgttctacgtggacggcaagtgg
gtcgaaggcaagaagtaa
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