Serratia sp. SCBI: SERRSCBI_13035
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Entry
SERRSCBI_13035 CDS
T03314
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sers
Serratia sp. SCBI
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sers03016
]
SERRSCBI_13035
Enzymes [BR:
sers01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SERRSCBI_13035
Transfer RNA biogenesis [BR:
sers03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SERRSCBI_13035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AIM22207
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All DBs
Position
complement(2803420..2804541)
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AA seq
373 aa
AA seq
DB search
MNYQLITTDAGLQQVCEQARKHAQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPI
KHWQPFVELLADTAVVKFLHAGSEDLEVFLNAFKTLPTPMIDTQILAAFTGRPLSCGFAT
LVAEYMKVELDKSESRTDWLARPLTERQCVYAAADVFYLLPMAKQLVQETEEAGWTAAAN
NECLLLCQRRSEALAPEVAYREISNAWQLRPRQLGCLQKLAEWRLRQARERDLAVNFVVR
EENLWQVARFMPSSLGELDSLGLSGPEIRYHGKTLLALVAEAEALEESDLPAPLANLIDQ
PGYKKVFKDIKAAIATVSEQSGLSSELLASRRQINQLLNWHWKLKDGESRPELISGWRGD
LLMAPLQDILKDY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcactaccgatgccggattgcagcaggtctgcgagcaggcgaga
aagcatgcccaggttgcgctggacaccgagtttgtcagaacgcgtacctactatccgcag
ctgggcctgatccagctttacgacggtgaacaactctcccttatcgatcctctgccgatc
aagcactggcaaccgtttgtcgagctgctggccgacaccgccgtggtgaagttcctgcat
gccggcagtgaagatcttgaagtgtttctcaacgcctttaaaacgctgccgacgccgatg
atcgacactcagatcctggcggcctttaccggtcggccgctctcctgcggctttgcgacg
ctggtggcggagtacatgaaggttgaactggacaagagcgagtcgcgcaccgattggctg
gcgcgcccgctgactgaaagacagtgcgtgtatgcggccgccgacgtgttctacctgctg
ccgatggccaaacagctggtgcaggagaccgaagaggccggctggaccgctgcggccaat
aacgagtgcttgctgctgtgccaacgccgtagcgaggcgctggcgccggaagtggcctat
cgcgaaatcagcaatgcctggcagttgcgcccgcgtcagcttgggtgtctgcagaagttg
gcggaatggcggttgcgccaggcgcgcgagcgcgatctggcggtgaacttcgtggttcgc
gaggagaacctgtggcaggtggcgcgctttatgccgtcttcgctgggagaactggattcg
ctgggcctgagcgggccggagatccgttatcacggcaaaacgctgttggcgctggtggcc
gaagccgaagcgctggaggagtccgatttgccggcgccgttggctaaccttatcgatcag
ccgggctacaagaaggtgtttaaggacatcaaggccgctatcgccaccgtcagcgagcaa
agcgggttgagcagcgagctgctggcatcccgtcgccaaattaaccaattgttgaactgg
cattggaaactgaaggacggcgagagtcgccctgaattaatcagcggctggcgcggcgat
ttattaatggcgccgttgcaggacatcctgaaagattattaa
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