Serratia sp. SCBI: SERRSCBI_15975
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Entry
SERRSCBI_15975 CDS
T03314
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sers
Serratia sp. SCBI
Pathway
sers03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SERRSCBI_15975 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sers03400
]
SERRSCBI_15975 (sbcB)
Enzymes [BR:
sers01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SERRSCBI_15975 (sbcB)
DNA repair and recombination proteins [BR:
sers03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SERRSCBI_15975 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SERRSCBI_15975 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SERRSCBI_15975 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AIM22775
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All DBs
Position
3401192..3402619
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AA seq
475 aa
AA seq
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MSSKATATFYIHDYETFGKSPSLDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPE
AVMITGITPQVARAKGVNEAEFTRQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYD
PYAYSWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHTQAHD
AMSDVYATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDVADMTPLVHVSGMFGAARGN
TSWVSPLAWHPDNKNAVIMCDLAGDMTPLLTLSAEQLRERLYTRRDDLAPDQAPVPIKLV
HINKCPVLAPAKTLLPENAERLGIDRQACLQNLQLLKQHPEVREKVVALFAEAEPFKGSE
DVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLAFSDGRMKELLFRFRARNYPNTLDD
AEQRRWLQHRQEALSAERVQSYLLQLESLYNLHEGDKEKTALLKALFDYGKELVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgagcagcaaggcaacggccacattttacattcacgattacgagaccttcggcaagagc
ccgtcgctggaccgcccggcgcagttcgccggcgtgcgcaccgatatggatttcaacatt
atcgaagagccgctggtcatctactgcgccccggccgacgattacctgccggaaccggag
gcggtgatgatcaccggcatcacgccgcaggtggcgcgcgccaaaggcgttaacgaagcc
gagttcacccgccaaatccatcaggccttcagcgtggccggcacctgcattctcggttac
aacaacatccgcttcgatgacgaagtgagccgcaatatcttctatcgcaacttctacgat
ccctacgcctacagctggcaaaacggcaactcgcgctgggatctgctggatgtgatgcgc
gcctgctacgctctgcgcccggacggcatcgtttggccggaaaacgaagacggtttcccc
agcttccgcctggaacacctgacgcgcgccaacggcgtcgagcacacgcaggctcacgat
gcgatgtcggacgtttacgccaccatcgccatggccaagctggtcaagcaggcgcagccg
cggctgttcgatttcctgttgcagcaccgtaataaacacaagctgaacgccctgatcgac
gtcgccgacatgacgccgctggtgcacgtctccggcatgttcggcgcggcgcgcggcaat
accagctgggtatcgccgctggcctggcacccggacaacaagaacgcggtgatcatgtgc
gatctggccggcgacatgacgccgctgttgacgctgagcgccgagcagctgcgtgagcgg
ctgtacacccgccgcgacgatctggcgccggatcaggcgccggtgccgatcaagctggtg
cacatcaacaaatgcccggtgctggcgccggccaaaaccctgctgccggagaacgccgag
cggctgggcatcgatcgtcaggcgtgcctgcaaaatctgcagctgctgaaacagcatccg
gaagtgcgcgagaaagtggtcgcgctgttcgccgaagccgagccgttcaaaggttccgag
gacgtcgacgcccgcttgtacgacggtttcttcagcgacgccgacaaggcggcgatgagg
attatccagcagaccaagccgcagaacctgccggcgctggatctggccttcagcgacggc
cgcatgaaagagctgctgttccgcttccgcgcgcgcaactacccgaatacgctggacgac
gccgagcagcgccgctggctgcaacatcgtcaggaagccttgagcgcggagcgcgtgcag
agctatctgctgcagctcgaatcgctgtataacctgcacgaaggcgacaaagagaaaacc
gccctgctgaaagcgctgttcgattacggcaaagagttggtgggataa
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