Serratia sp. SCBI: SERRSCBI_18850
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Entry
SERRSCBI_18850 CDS
T03314
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sers
Serratia sp. SCBI
Pathway
sers03030
DNA replication
sers03430
Mismatch repair
sers03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SERRSCBI_18850 (dnaE)
03430 Mismatch repair
SERRSCBI_18850 (dnaE)
03440 Homologous recombination
SERRSCBI_18850 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sers03032
]
SERRSCBI_18850 (dnaE)
03400 DNA repair and recombination proteins [BR:
sers03400
]
SERRSCBI_18850 (dnaE)
Enzymes [BR:
sers01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SERRSCBI_18850 (dnaE)
DNA replication proteins [BR:
sers03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SERRSCBI_18850 (dnaE)
DNA repair and recombination proteins [BR:
sers03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SERRSCBI_18850 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AIM23342
LinkDB
All DBs
Position
complement(4014824..4018312)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKTAPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEVLGDELAQLTVLASNNEGYQNLTLLISRAYQRGYGAAGPIIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQAQVDQCLDFYQQYFPDCYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKARGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANIAPWPEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKRGNRIGICT
LDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREVMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVDLEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgtccacagtgactactccatgattgatgga
ttggccaagacggcgccgctggtgaaaagagccgccgcgttagccatgcctgctctggca
atcaccgatttcaccaacctgtgcgggctggtgaagttctacggcagcgcgcacggcgcc
gggatcaaaccgatcatcggcgcggatttccatgtgcaaagcgaagtcttgggcgacgaa
ctcgctcaactgacggtgctggccagcaacaacgaaggctaccagaacttaacgctgctg
atttcccgcgcctatcagcgcggctacggcgccgccggcccgatcatcgatcgcgactgg
ctgattgaacatcgcgaagggctgatcctgctctccggcgcgcgtcagggcgacgtcggc
aagttcctgctgcgcggcaaccaggcgcaggtggatcagtgtctggatttctaccagcaa
tatttcccggactgctactacctggagttgatccgcaccggccgcccggatgaagagaac
tatctgcatgcggcggtggcgttggccaccgagcgcggtttgcctgtggtggccaccaac
gacgtgcgtttcctggtggaagatgacttcgacgcccatgagatccgcgtcgccatccac
gacggctttacgctggacgatcccaagcggccgcgcaactacagcccgcaacaatacatg
cgcagcgaagacgagatgtgcgagctgttcgccgacatcccggaagcgctgctgaacagc
gtcgaaatcgccaaacgctgtaacgtcaccattcgcctcggcgagtacttcctgccgcag
ttcccgaccggcgatatgagcaccgaggacttcctggtactcaaatcgaaagaggggctg
gaagagcgcctcgagttcctgttccccgatcctgaagtgcgcgcgcagcgccgcccggaa
tacgacgagcgtctggacgtcgagctgaaagtgatcaaccagatggggttccccggctac
ttcctgatcgtgatggaatttatccagtggtcgaaggacaacaacgtgccggtgggccca
gggcgtggctccggcgccggttcgctggtggcctatgcgttgaaaatcaccgacctcgat
ccgctggaattcgacctgctgttcgaacgcttcctgaacccggaacgtgtctcgatgccc
gacttcgacgtcgacttctgcatggagaaacgtgaccaggtaatcgagcacgtggcggag
atgtacggccgcgaagcggtatcgcagatcatcaccttcggcaccatggcggcgaaagcg
gttatccgcgacgtaggccgcgtgttggggcacccgtacgggttcgtcgatcgcatctcc
aaactggtgccgccggatccgggcatgacgctggagaaagccttcgccgccgaaccgcag
ctgccggagatttacgaggccgacgaagaggtcaaagcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgcaacgccggtaaacacgccggtggcgtggtgatcgcgccgacc
aagatcaccgacttcgcgccgctgtactgcgatgccgaagggaaccacccggtgacccag
ttcgacaagaacgacgtggaatacgccgggctggtgaagttcgacttcctcggtctgcgc
accctgaccatcatcgactgggcgctggagatgattaacgcccggcgcgccaagaccggg
ctggaaccgatcgacatcgctgccatcccgctcgatgacaagaaaagcttcgacatgctg
cagcgttcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaagatttgatc
aaacgtctgaagcccgactgcttcgaagacatgatcgcactggtggcgctgttccgtccg
gggccgctgcagtcgggcatggtggataacttcatcgaccgcaaacatggccgcgaagag
atctcctacccggacattcagtggcagcatgagtcgctcaagccggtgctggagccgacc
tacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtgctggccggctat
acgctgggcggcgcggacatgctgcgccgtgcgatgggtaaaaagaacccggtcgaaatg
gccaagcagcgcggcggctttgaagacggcgccaaagcgcgcggcatcgacggcgaactg
tcggtgaaaatcttcgacctggtggagaaattcgccggttatggcttcaataaatcgcac
tccgccgcctacgcgctggtgtcgtaccagacgctgtggctgaaggcgcactatccggcc
gagtttatggcggcggtgatgaccgccgatatggacaacaccgacaaagtggtgggtctg
gtggacgaatgctggcgcatggggctgaagatcctgccgccggacatcaacagcggcctg
tatcacttccacgtcaacgacgacggcgagatcgtttacggcatcggcgccatcaagggc
gtgggggaagggccgatcgaagccattatcgaagcgcgcaacagcggcgagcaaggttat
ttcaaagacctgttcgatctctgcgcgcgctccgacatcaagaaactgaaccgccgcatt
ctggaaaaactgatcatgtccggggcgttcgatcgccttgggccacaccgcgccgcgctg
atgaattcgctcggcgacgcgttgaaagcggcggatcagcatgcgaaagccgaagctatc
ggccaggtggacatgtttggcgtgctggcggaagcgccggagcaggtggagcaatcctac
gccaacatcgcgccctggccggagcaggtggtgttggacggtgaacgggaaacgctgggg
ctgtacctgaccggccacccgatcacccaatacctcaaggagatcgaacgttacgccggt
ggccagcgtttgaaagacatgcacccgacggatcggggcaaaatgactaccgccgtcggg
ttggtggtcgccgcgcgggtgatggtgaccaagcgcggcaaccgcatcggcatctgtacg
ctggatgaccgttcgggccgtctggaagtgatgctattcaccgaagcgttagaaaaatac
cagcatttgttggaaaaagaccgtatccttatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgatggcccgcgaggtaatggacatcagtgaagcccgggaa
aaatacgctcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctctac
tatcaacgggaagatgcgcgagccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatagacttgcggacgttggtaggcaatgagcaggtggacttggaa
tttgactaa
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