Serratia sp. SCBI: SERRSCBI_19440
Help
Entry
SERRSCBI_19440 CDS
T03314
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sers
Serratia sp. SCBI
Pathway
sers03410
Base excision repair
sers03430
Mismatch repair
sers03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SERRSCBI_19440
03430 Mismatch repair
SERRSCBI_19440
03440 Homologous recombination
SERRSCBI_19440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sers03400
]
SERRSCBI_19440
DNA repair and recombination proteins [BR:
sers03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SERRSCBI_19440
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SERRSCBI_19440
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SERRSCBI_19440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
AIM23454
LinkDB
All DBs
Position
complement(4156051..4157784)
Genome browser
AA seq
577 aa
AA seq
DB search
MSIKTQLRRRPAADDTHLPASLPPLLRRLYALRGVQAEQELERGVKGMLPWQQLDGIDDA
VSLLQQALADGRRIMVVGDFDADGATSTALTVLALRSMGGAAVDYLVPNRFEDGYGLSPE
VVEQAAARGAELIVTVDNGISSHAGVDVAHAKGMQVLVTDHHLPGETLPAAEAIVNPNLR
GCAFPSKSLAGVGVAFYLMLALRARLRDSGWFEQRALAMPNLAELLDLVALGTVADVVPL
DANNRILVYQGLNRIRAGKCRPGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDM
SIGVALLLSDDIAQARMLANDLDALNQTRREIEQGMQVEALQLCDQLERTSTELPYGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSVPGLHMRDALERLDMLNP
GLMMKFGGHAMAAGLSLEEAKFDEFRQRFGELVGEWLDPAMLEGVIWSDGELAMQELSLT
TAELLREGGPWGQAFPEPTFDGKFRILQQRLVGEKHLKLMVEPLGGGPLLDGIAFNVDTT
LWPDSSVREVELAYKLDVNEFRGNRNVQLLIQHLWPR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgagtatcaaaacgcaactacgccgccgcccggcggcggacgacacgcatcttcccgcc
agtttgccgccgcttctgcgccggctttacgccctgcgcggcgtgcaggctgagcaagag
ctggagcgcggcgttaagggcatgctgccctggcaacagctggacggcatcgacgacgcc
gtcagcctgttgcagcaagcgctggccgacggtcgccgcatcatggtggtgggcgatttc
gacgccgatggcgccaccagcaccgcgctgacggtgctggcgctgcgcagcatgggcggc
gcagccgtcgattatctggtgcctaaccgtttcgaagacggttacggcctgagccccgaa
gtggtggagcaggcggcggcgcgcggcgcagaactcattgttaccgtcgataacggcatc
tcctcccacgccggcgtcgacgtggcgcacgccaaaggcatgcaggtgctggtgaccgat
caccacctgccgggcgagaccctgccggcggctgaagcgatcgttaaccccaacctgcgc
ggctgcgccttcccgtccaaatcgctggcgggggtaggcgtggcgttctacctgatgctg
gcgctgcgcgcccggctgcgggacagcggctggttcgagcagcgcgcgctggcgatgccg
aatctggcggaactgctggatctggtggcgctcggcaccgtggccgacgtggtgccgctg
gacgccaacaaccgcattctggtgtatcagggattaaaccgcatccgcgccggcaaatgc
cgaccgggcatccgcgcgctgctcgaagtggccaaccgcgacgcccgccaactggcggcc
aacgatctcggtttcgccctcggcccgcggctcaacgccgccggcaggctggacgacatg
tcgatcggtgtggcgctgctgctgagcgacgacatcgcgcaggcgcgcatgctggccaac
gatctcgatgcgctgaaccagacgcgacgcgagatagagcagggcatgcaggtggaagcc
ctgcagctgtgcgatcagctggagcgcaccagcaccgagctgccttacgggctggcgatg
tatcacccggaatggcatcagggcgtggtgggcatcctcgcttcgcgcatcaaagagcgt
ttccaccgtccggtgatcgctttcgcgccggcgggcgacggcatcctgaaaggctccggc
cgttcggtgcccggcttgcacatgcgcgacgcgctggagcggctggatatgctgaacccc
gggctgatgatgaagttcggcggccacgcgatggcggccgggctgtcgctggaagaggct
aaattcgacgagttccgccagcgtttcggcgagctggtgggcgaatggctcgatccggcg
atgttggaaggggtgatctggtccgatggcgaactggcgatgcaggagctgtcgttgacg
acggcggagctgctgcgcgagggcggcccgtggggccaggcgttcccggaaccgaccttc
gacggcaagttccgcatcctgcagcagcggttggtgggtgagaaacacctgaagctgatg
gtggaaccgcttggcggcggcccgttgctcgacggcatcgcgttcaacgtggacaccacg
ctgtggccggacagcagcgtgcgcgaagtggaactggcctacaaactcgacgtcaacgag
tttcgcggcaaccgcaacgtgcaactgctgatccagcacctttggccgcgctga
DBGET
integrated database retrieval system
