Serratia sp. SCBI: SERRSCBI_23050
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Entry
SERRSCBI_23050 CDS
T03314
Symbol
rfaD
Name
(GenBank) ADP-L-glycero-D-mannoheptose-6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
sers
Serratia sp. SCBI
Pathway
sers00541
Biosynthesis of various nucleotide sugars
sers01100
Metabolic pathways
sers01250
Biosynthesis of nucleotide sugars
Module
sers_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SERRSCBI_23050 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sers01005
]
SERRSCBI_23050 (rfaD)
Enzymes [BR:
sers01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
SERRSCBI_23050 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
sers01005
]
Core region
SERRSCBI_23050 (rfaD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
KR
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AIM24164
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All DBs
Position
4950806..4951735
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AA seq
309 aa
AA seq
DB search
MIIVTGGAGMIGSNIIKALNDKGYRDILVVDNLKDGTKFVNLVDLDIADYIDKEDFIASI
VAGDDLGEIEAVFHEGACSATTEWDGKYMMDNNYQYSKDLLHYCLDREIPFLYASSAATY
GGREEFIEERQYEAPLNVYGYSKFLFDQYVREILPEADSQICGFRYFNVYGPREGHKGSM
ASVAFHLNTQINRGENPKLFAGSENFKRDFIYVGDVAAVNLWFWETGKSGIFNCGTGRAE
TFQAVADAVVDFHQQGAVEYIEFPEKLKGRYQAYTQADLTKLRAAGYDAPFKTVAEGVKE
YMAWLNRTA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgttactggcggcgccggcatgatcggcagcaacatcattaaggcactgaac
gacaagggatatcgcgatatcctggtggtggacaacctgaaagacggcaccaagttcgtc
aacctggtcgatctggacatcgccgactatatcgataaagaagactttatcgccagcatc
gtggccggcgacgatctgggcgagatcgaagcggtgttccacgaaggcgcctgctctgcg
accaccgagtgggacggcaagtacatgatggacaacaactatcagtactccaaagacctg
ctgcactactgcctggatcgcgagattccgttcctgtatgcctcctccgccgccacttac
ggcggccgcgaagagtttatcgaagagcgtcagtatgaagcgccgctcaacgtgtacggc
tattccaaattcctgttcgatcagtacgtgcgtgagatcctgccggaagcggactcgcag
atctgcggcttccgctacttcaacgtttacggcccgcgtgaaggccacaaaggcagcatg
gccagcgtcgccttccacctgaacacccagatcaaccgcggcgaaaacccgaaactgttc
gccggcagcgaaaacttcaagcgtgacttcatctacgtcggcgacgtggcggcggtcaac
ctgtggttctgggaaaccggcaaatccggcatcttcaactgtggcaccggccgggcggaa
accttccaggcggtggctgacgcggtggtggacttccatcagcaaggcgcggtggaatac
atcgagttcccggagaagctgaagggccgctatcaggcgtacacccaggccgatctgacc
aagctgcgcgccgccggctacgacgcaccgttcaaaacggtcgccgaaggcgtgaaagag
tacatggcctggttgaaccgcaccgcataa
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