Serratia sp. SCBI: SERRSCBI_23125
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Entry
SERRSCBI_23125 CDS
T03314
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sers
Serratia sp. SCBI
Pathway
sers03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sers00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SERRSCBI_23125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sers03400
]
SERRSCBI_23125
Enzymes [BR:
sers01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SERRSCBI_23125
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SERRSCBI_23125
DNA repair and recombination proteins [BR:
sers03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SERRSCBI_23125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-dskA_traR
Motif
Other DBs
NCBI-ProteinID:
AIM24179
LinkDB
All DBs
Position
complement(4966526..4967341)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETSRRGIEPYLVGHSIQYAVVRNARLRWPVSEQILTLSDQPVLSVQRRAKYLL
IELERGWIIVHLGMSGSLRMLREENEDEAGKHDHVDLVINNGMILRYTDPRRFGAWLWCE
DLATSSVLAHLGPEPLSEAFNGDYLYEKSRNKRTLIKPWLMDNKLVVGVGNIYASESLFS
AGILPDRPAGSLTKAEAALLAKTIKAVLQRSIEQGGTTLRDFLQSDGKPGYFAQELQVYG
RAGEPCRTCGTPIESARHGQRSTFFCRRCQR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccggaagttgagacgagcagacgtggtatagagccttatcttgtcggc
cacagcattcagtatgcggtggtgcgcaacgcgcgcctgcgctggccggtttccgagcag
atcctgacgctgagcgatcagccggtgctcagcgtgcagcgtcgggccaaatacctgctg
attgagctggagcgcggttggattatcgtgcatctgggcatgtcgggcagcctgcgcatg
ctgcgtgaggaaaacgaagacgaagccggcaaacacgaccacgtcgatctggtgatcaac
aacggtatgatcctgcgttataccgatccgcgccgcttcggcgcctggctgtggtgcgaa
gacctggcgaccagcagcgtgttggcgcatctggggccggaaccgctgagtgaggcgttc
aacggcgactacctgtatgaaaaatcacgtaataagcgcacgctgatcaaaccgtggctg
atggataataagctggtggtcggggtcggtaacatttacgccagtgaatcgctgttcagc
gccgggatcctgcccgatcgtccggcgggatccttgaccaaagccgaagcggcgctgttg
gcgaagaccatcaaggcggtgttgcaacgctccatcgagcagggcggcaccacattgcgc
gactttttgcagtcggacgggaaaccggggtacttcgcgcaggagctgcaggtttacgga
cgggcgggagaaccgtgccgcacatgcggcacgccgattgaatccgccaggcacgggcag
cgcagcaccttcttttgccgacgctgccagcgctga
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