Serratia sp. Tan611: TAN611_1313
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Entry
TAN611_1313 CDS
T10950
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sert Serratia sp. Tan611
Pathway
sert03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sert00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TAN611_1313 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sert03019
]
TAN611_1313 (rhlE)
Enzymes [BR:
sert01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TAN611_1313 (rhlE)
Messenger RNA biogenesis [BR:
sert03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TAN611_1313 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAE1143684
LinkDB
All DBs
Position
Tan611:1368054..1369421
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AA seq
455 aa
AA seq
DB search
MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSSKPSAVKGRRPVRALILTPTRELAAQIGENVRAYSQHLRLRSLVVFGGVSINPQMM
KLRGGVDILIATPGRLLDLEHQNAVDLSNVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALAGKLLHNPASVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGRIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPTIKAEPIINGRQQRGGRGNGNPGRGNGNGGGQRAANGGGQ
RDNRGNGAQRARPQGEGKPRSGAPARRPRRSRPAE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttgagtgccgaaatcctgcgtgccgttgaagaacagggc
tatcgcgaacctacgccgattcaacgtcaggcgatcccggtagtgctggaaggacgcgac
ctgatggccagcgcccagaccggcaccggcaaaaccgccggctttaccctgccgctgctg
cagctgctgagcagcaaaccgagcgcggtgaaaggccgccgcccggtgcgcgcgctgatc
ctgacgccgacccgtgaactggcggcgcaaatcggcgagaacgtccgtgcctacagccag
cacctgcgcctgcgctcgctggtggtgttcggcggcgtcagcatcaacccgcagatgatg
aaactgcgcggcggggtggatattctgatcgccacgccgggccgcctgctggatctggaa
catcagaacgctgttgacctgtccaacgtggaaatcctggtgctggacgaagccgaccgc
atgctggatatgggctttattcacgatattcgccgcgtgctggccaagctgccggcgaaa
cgtcagaacctgctgttttccgccaccttctccgacgatatcaaggcgctggccggcaaa
ctgctgcacaacccggcatcggtggaagtggcgcgccgcaacaccgcctctgagcaggtg
acgcagcacgttcactttgtcgacaagaagcgcaagcgggaactgctgtcgcagatgatc
ggcgaaggcgactggcgtcaggtgctggtgtttacccgcaccaaacacggcgccaaccat
ctggccgagcagctgaataaagacggcatcaccgctgccgcgatccacggcaataaaagc
cagggcgcacgtacccgggcgctggctgattttaaagacggccgtattcgcgtgctggtg
gcgaccgatatcgcggcgcgtggtctggatatcgaccaactgccgcacgtggtgaactat
gagctgccgaacgtgccggaagactacgtgcaccgcatcggccgtaccggccgtgcggaa
cgcaccggtgaggcgatatcgctggtgtgcgtcgacgaacacaaactgctgcgcgatatc
gaacgcctgctgaagcgcgaaattccgcgcatcgccctgccgggttatgagccggatccg
accatcaaggcggaaccgatcatcaacggccgtcagcagcgcggcggccgcggtaacggt
aacccgggacgcggcaacggtaacggcggcggacagcgcgcggccaacggcggcggtcag
cgagacaaccgcggcaacggcgcccagcgcgcccgtccgcagggcgaaggcaaaccgcgc
agcggcgcgccggcccgtcgtccgcgccgtagccgaccggcggagtaa
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