Serratia sp. Tan611: TAN611_1976
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Entry
TAN611_1976 CDS
T10950
Symbol
rne
Name
(GenBank) fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sert Serratia sp. Tan611
Pathway
sert03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sert00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TAN611_1976 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sert03019
]
TAN611_1976 (rne)
03009 Ribosome biogenesis [BR:
sert03009
]
TAN611_1976 (rne)
Enzymes [BR:
sert01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TAN611_1976 (rne)
Messenger RNA biogenesis [BR:
sert03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TAN611_1976 (rne)
Ribosome biogenesis [BR:
sert03009
]
Prokaryotic type
rRNA processing factors
TAN611_1976 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
CAE1145152
UniProt:
A0A7S4LVX2
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All DBs
Position
Tan611:complement(2042595..2045927)
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AA seq
1110 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPNSYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKMYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQAGVKAVIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPPEEIPMERKRPEQPALASFSLAADAPP
PAAEPATAKKPTASQPAAPAATPGLLSRFFSGLKSLFAGEEPQPVAEEKPVETAKSNGGE
NRRQDRRNQRRQGSGRKERGERSERNERGERKERGEGRERDNREGRERDNREGRERDNRD
TRDEQRRNRRNAANNAPVASDAPVDEAAKAQREEQQQQRREQRAERQRRRQEEKRQAQQE
AKQQEKAAVAPVAATEEDKEERHQQPAQRRQRRQLSQKVRILSAEEELQRAAEELLAPKA
PAETAEEAKAPAADDSVKLLPETVATTGEEDTQENRNGENGMPRRSRRSPRHLRVSGQRR
RRYRDERYPTQSPMPLTAAFASPEMASGKVWIGYPVTTTAQAVEETEVKRQPSVTAEQQP
VAEVAASVAAPAIVAAQKEVQAPVAAANVEPAESAPVAAPLQEEAKAPQPAAVEAPADVA
SDVQPAAEATPAPAQPEEQPVPAAAEPAADETAVEEAEEKAVAAEKTVEEPTIAAPAEAV
VSEPAPQTASDEAAAAPAPVIAAQPAETRYKHIASAPMTKAPAPAYQPEAPKHSDWQRPA
FDFEGKGSAGGHSAVNQATAPATKPQPVND
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcaacaggaagagttgcgtgttgcccttgtagat
ggacagcggctgtacgatttggatatcgaaagcccgggtcatgagcagaaaaaagcgaac
atttacaaaggcaaaatcacccgtatcgaaccaagtcttgaagcagcgtttgttgactac
ggcgcagaacgacatggtttccttcctcttaaagaaatcgcccgcgaatacttccctaac
agctattcctcccatggccgccccaacatcaaagatgtgctgcgcgaaggccaggaagtg
atcgtacaggttgataaagaagaacgcggcaacaaaggcgccgctctgaccacctttatc
agcctggccggcagctatctggtgttgatgccgaacaacccgcgcgccggcggtatttcc
cgccgcatcgagggcgatgaccgcaccgaactgaaagaagcgctctcttcactgcaactg
cccgacggcatgggcctgatcgtccgcaccgccggcgtcggcaaatccgccgaagcgctg
cagtgggacctgtcgttccgtctcaagcactgggaagccatcaagaaagccgccgaaggc
cgccctgcaccgttcctgattcaccaggaaagcaacgttatcgtccgtgccttccgcgat
tacctgcgtcctgacatcggtgaaatcctgatcgataacccgaaaattctcgatctggcg
aaagaacacattgccgcgctgggacgcccggacttcagcagcaaaattaaaatgtacagc
ggtgaaatcccgttgttcagccactaccagattgagtcgcagatcgaatccgctttccag
cgtgaagtgcgcctgccttccggcggttccatcgttatcgacaccaccgaagcgctgacc
gcgatcgacatcaactccgcacgcgccacccgcggcggcgatatcgaagaaaccgcattc
aacaccaacctggaagcggcggatgagattgcccgtcagctgcgcctgcgcgaccttggc
ggcctgatcgtcatcgactttatcgacatgacgccggtacgccaccagcgcgaagtagag
aaccgcctgcgtgatgcggtgcgtcaggatcgcgcacgcattcagatcggccgtatttcc
cgcttcggcctgctggagatgtcccgtcagcgcctcagcccgtcgctgggcgagtccagc
caccacgtctgcccgcgctgtaacggcaccggcaccgtgcgtgacaacgaatcgctggcg
ctgtccatcctgcgtctgattgaagaagaagcgctgaaggaaaacaccaaagaggtgcac
gccatcgtgccggttcaggttgcttcttacctgctgaacgaaaaacgtgaatccgtcagc
gccatcgaaaaacgtcaggccggcgtgaaagccgtcatcgtgccgaacgatcagatgcaa
accccgcattactcagtactgcgcgtgcgcaaaggtgaagaaacgccaaccctgagctat
ctgctgccgaagctgcatgaagaagagatggcgcagccgccggaagagatcccgatggaa
cgtaagcgtccggaacaaccggcgctggcttccttctctctggccgccgatgcgccgccg
ccggcggctgaacccgccacggcgaagaaaccgaccgccagccagccggctgcgccagcc
gcaacgccaggcctgctcagccgcttcttcagcggtctgaaatcgctgttcgccggtgaa
gagccgcagcccgtcgcggaagagaaaccggttgaaaccgcgaaaagcaacggcggcgag
aaccgtcgtcaggatcgtcgtaatcagcgtcgtcagggctctggccgtaaagagcgcggt
gaacgtagcgagcgcaatgagcgtggtgagcgtaaggagcgcggtgaaggccgtgagcgc
gacaaccgtgaaggacgcgaacgcgataaccgtgaaggacgcgaacgcgataaccgcgat
acgcgtgacgagcagcgccgcaatcgccgtaacgccgcgaataacgcgccggtagccagc
gatgcgccggttgatgaagccgcaaaagcgcagcgcgaagagcaacagcagcagcgccgc
gagcagcgcgccgagcgtcagcgtcgtcgtcaggaagagaagcgccaggcacagcaagaa
gcgaagcagcaggagaaggccgccgtcgcaccggtagccgccactgaagaagataaggaa
gagcgccatcagcaaccggctcagcgtcgtcaacgccgccagctgtcgcagaaggtgcgt
atcctgtcagcagaagaagaactgcagcgcgctgcggaagagctgctggcgccaaaagca
ccggcggaaaccgctgaggaagccaaagcgcctgcggcagacgacagcgttaaactgctg
ccggaaaccgtagccaccaccggcgaagaagacacgcaggaaaaccgtaacggtgaaaac
ggcatgccgcgccgctcacgtcgttcaccgcgtcatctgcgcgtgagcggccagcgtcgt
cgtcgttaccgcgacgagcgttatccgacccagtcgccgatgccgctgacggctgcgttt
gcctctccggaaatggcgtctggcaaggtctggatcggttaccctgtcacaacaactgcg
caagcggttgaagagactgaggttaagcgccagcctagcgtcacagccgaacaacagccg
gtagcggaagttgccgccagcgttgctgcgccggcaatcgtcgccgcccagaaagaggtt
caggctccagtcgccgccgctaacgtcgaaccggctgaaagtgcgccagttgccgcgcca
ctgcaggaagaggccaaagcgccgcagccggcagccgttgaggcaccggccgacgtcgcc
agcgatgttcagcctgcggctgaggccacaccggccccggctcagcctgaagagcagcct
gtgcctgccgccgctgaaccggcagccgacgaaactgccgttgaagaagctgaagaaaaa
gcggtagctgcagagaagaccgttgaggaaccgaccattgcggcgccagccgaagcggtc
gtcagcgaaccagctccgcagacggcaagcgatgaggcagcggcagcccctgcgccagtc
atcgcggctcagccggcagagacgcgttacaagcacatcgccagcgcaccgatgaccaaa
gcgcctgccccggcttatcagccggaagcgccgaagcacagtgactggcagcgtccggcc
tttgattttgaaggcaaaggcagcgccggtggccactcggcggtaaaccaggccaccgcc
ccggccaccaagccacagccggttaacgattaa
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