Serratia sp. Tan611: TAN611_3937
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Entry
TAN611_3937 CDS
T10950
Symbol
hrpB
Name
(GenBank) ATP-dependent (RNA) helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sert Serratia sp. Tan611
Brite
KEGG Orthology (KO) [BR:
sert00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sert03019
]
TAN611_3937 (hrpB)
Enzymes [BR:
sert01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TAN611_3937 (hrpB)
Messenger RNA biogenesis [BR:
sert03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TAN611_3937 (hrpB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
WHD_HA2
AAA_22
ResIII
DUF6368
DUF2934
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAE1149797
LinkDB
All DBs
Position
Tan611:complement(4057407..4059845)
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AA seq
812 aa
AA seq
DB search
MSLLPVSQVLDELLAALRSAPQVLLHAPTGAGKSTWLPLQILRQASLPGRIIMLEPRRLA
AKNVAYRLAQQLGEEPGQTVGYRMRAESKSGPQTRLEVVTEGILTRMLQQDAELQGVSLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNARLSQLLPDAPVVVSQGRS
FPVARHYQPLASHQRLEDGVASAVKRLLVEQSGSLLLFLPGVAEIQRVMERLQGEVAGDV
DLCPLYGALPLAQQQRAIQPAVAGRRKVVLATNIAETSLTIEGIRLVVDSGLERTARYDV
RNGLTRLMTQRISQASMVQRAGRAGRLEEGVCWHLCAKEQAERAAEYAEPEIMHSDLGAF
WLELLQWGCVDAGQLNWLDLPPTAALAAAQRLLQTLGATDEQGKLTADGRRMATLGCEPR
LAAMLCAGAALGEDGLATAALLAALLEEPPRSGQLDMDYWLSRPQPNWQRRARQLTQRLK
GRGGHVDATLAPQLLAHAFADRIAQRRGQDGRYLLANGMGAAMNQDEALSRAPWLIAPAL
LQGANSPDARILLALPVDVERLAAQRPEIAHQRTAVEWDEEKGTLRAWQRLQIGRLTLRA
RPLAKPADEELQQALVDWVRGQGLSVLNWEGAAGQLRARLQCAREWLPEANWPAVDDEAL
LAGLEQWLLPALGGVRDLRGLRQVNLAEALGNLLEWQQKQRLDNALPTHYTVPTGSRLPI
RYEAGKPPLLPVRLQEMFGERHSPMLAEGRIAVVLELLSPAHRPLQITADLAAFWQGAYR
EVQKEMKGRYPKHVWPDDPANALPTRRTKKYQ
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttattgcccgtcagccaggtgttggatgaattgcttgccgcgctgcgcagcgcg
ccgcaggtgttgctgcatgcgccgaccggcgccggtaaatccacctggctgccgctgcag
atcctacggcaggccagcctgccggggcgcatcatcatgctggagccgcggcgtctggcg
gcgaaaaacgtcgcttatcgcctggcgcagcagctgggtgaggagccgggccagacggtg
ggctaccgcatgcgcgccgaaagtaaaagcgggccgcagacgcggctggaagtggtcacc
gaaggcattctgacccgcatgctgcagcaggacgcggagctgcagggcgtctcgctggtg
attctggatgagtttcatgaacgcagcctgcaggccgatttggcgctggcgctgctgctg
gacgtgcagcaggggctgcgcgacgatctgaagctgctgattatgtcggcgacgctggat
aacgcccgtctgtcgcagctgctgccggacgcgccggtggtggtgtcgcaggggcgcagt
ttcccggtggcgcgccactatcagccgctggccagtcatcagcggctggaggacggcgtc
gcctcggcggtgaaacgcctgctggtggagcagtctggctcgctgctgctgtttttaccg
ggcgtggcggaaattcagcgggtgatggagcgtctgcagggtgaagtcgccggcgatgtc
gacctgtgcccgctgtacggcgcgttgccgctggcgcagcagcagcgggcgattcagccg
gccgtcgccgggcggcgtaaggtggtgctggcgaccaatattgccgaaaccagcctgacg
attgaggggatccggctggtggtggacagcggtctggaacgcacggcgcgctacgatgtg
cgtaacggcctgacgcgcctgatgacgcagcgcatcagtcaggcgtcgatggtgcagcgc
gcagggcgcgccggtcgtctggaggagggggtctgctggcatctgtgtgccaaagagcag
gccgagcgcgccgccgagtacgccgagccggaaatcatgcacagcgatctcggcgctttc
tggctggagctgctgcagtggggctgcgttgacgccggccagctgaactggctggatctg
ccgccgactgcggcgctggcggcggctcagcggctgttgcagacgctgggcgccaccgat
gaacagggcaagctgacggcagacggacgccggatggcgacgctcggctgtgaacctcgg
ttggcggcgatgctgtgcgccggcgcggcgctgggggaggacggcctggcgaccgccgcg
ctgctggccgccctgctggaagagccgccgcgcagcggacagctggatatggattactgg
ctcagccgaccgcagccgaactggcagcggcgcgcccgccaactgacgcagcgcctgaag
gggcgcggcggccatgtggacgccacgctggcgccgcagctgctggcgcacgcctttgcc
gaccgcattgcccagcggcgcgggcaggacggccgctacctgctggcaaacggcatgggg
gcggcgatgaaccaggacgaggcgctgtcgcgcgcgccgtggctgattgcgccggcattg
ctgcagggggcgaacagcccggatgcgcgcattttgctggcgctgccggtggacgtcgaa
cggctggcggcgcagcggccggagattgcccaccagcgcaccgcggtggagtgggatgag
gaaaaaggcacattgcgtgcctggcagcgtctgcagattggccgtttgacgctgcgcgcc
cggccgttggcgaaaccggcggatgaggagctgcagcaggcgctggtcgactgggtgcgt
ggccagggcttatcggtgctgaactgggagggcgccgccggccagctgcgcgcgcgtctg
cagtgcgcccgggagtggttgccggaggccaactggccggcggtggacgacgaggcgctg
ttggcggggctggagcagtggctgctgccggcgctcggcggggtgcgcgatctgcgcggt
ttgcggcaggtcaatctcgccgaggcgctgggcaacctgctggagtggcaacaaaaacag
cggctggataatgcgctgcccactcattacactgtgccgaccggcagccgcctgccgatc
cgctatgaggccggcaagccgccgctgctgccggtgcgtttacaggagatgttcggcgag
cggcacagcccgatgctggcggagggtcgcatcgcggtggtgcttgagttactctctcca
gcgcaccggccgctgcagattactgccgatctggcggcgttctggcagggcgcctaccgg
gaagtacaaaaagagatgaaagggcgctacccgaagcacgtctggcccgatgacccggcc
aatgcgctgccgacgcggcgcaccaagaagtatcagtag
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