Serratia sp. JSRIV001: KGP17_01465
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Entry
KGP17_01465 CDS
T11585
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
serv Serratia sp. JSRIV001
Pathway
serv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
serv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KGP17_01465 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
serv03021
]
KGP17_01465 (rpoB)
03400 DNA repair and recombination proteins [BR:
serv03400
]
KGP17_01465 (rpoB)
Enzymes [BR:
serv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KGP17_01465 (rpoB)
Transcription machinery [BR:
serv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KGP17_01465 (rpoB)
DNA repair and recombination proteins [BR:
serv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KGP17_01465 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
iRhom1-2_N
Motif
Other DBs
NCBI-ProteinID:
UAN46261
LinkDB
All DBs
Position
336053..340081
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKIVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKARRITARHIRQLEKDEIRSIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETVRVDPTSDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFEEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVDKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEAEKLSKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
LKSDFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQHQEVAK
LREFIQKAYDLGDGVCQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEGD
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaagaaacgtattcgtaaggattttggtaagcgtccacaa
gttttggacataccttatctcctttctatccagcttgactcgttccagaaatttatcgag
caagatccagaagggcaatacggcttagaagccgcattccgttctgttttcccgatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtgttt
gacgttaaagagtgccagatccgtggtgtgacgtactctgcaccgctgcgcgtaaaactg
cgcctggtcatctacgaacgtgaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgaaaacggtacctttgtcattaacggt
actgagagggttatcgtatcccagctgcatcgtagtcctggtgtgttcttcgacagcgat
aagggcaaaacccactcctcgggcaaagtgctgtataacgcacgtatcatcccttaccgt
ggctcatggctggatttcgagtttgacccgaaagacaacctgttcgtgcgtatcgaccgt
cgccgcaaactgcctgcgaccattattctgcgcgcgctgaactacaccactgagcagatc
cttgacctgttctttgagaaaattgttttcgagatccgtgataacaagctgcagatggag
ctggttccagagcgtctgcgtggtgaaactgcgtccttcgatatcgaagccaacggtaag
atctacgttgagaaagcacgccgtatcaccgctcgtcatatccgtcagctcgaaaaagac
gaaattcgcagcattgaagtaccggttgagtacatcgcgggcaaagtggtcgcgaaggac
tatatcgataccaataccggcgaattgatctgtgcagccaacatggagctgtcactggat
ctgttggccaagctgagccagtcaggccacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggtgcgtacatctctgaaaccgtacgtgtcgacccaaccagcgatcgtctg
agcgctctggtagaaatctaccgcatgatgcgccctggtgagccaccaacgcgtgaagcg
gcggaaagcctgttcgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggccggatgaagttcaaccgttctctgctgcgtgacgagatcgaaggttcgggcatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacttgggcaaccgtcgtatccgttccgttggcgaaatggcc
gagaaccagttccgtgtcggtctggtacgtgttgagcgtgcggtgaaagaacgtctgtcc
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccaatttcggcg
gcggtgaaagagttcttcggttcaagccagctgtcccagtttatggaccagaacaacccg
ttgtccgagatcacgcacaaacgtcgtatctctgcattgggcccaggcggtctgacccgt
gaacgtgccggctttgaagttcgagacgtacacccgactcactacggtcgcgtgtgccca
atcgaaacgccggaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggtgacc
gatgaaatcaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggacgaagaaggccgctttgaagaagacctggttacctgtcgtagcaaaggc
gaatcaagcctgtttagccgcgaccaggttgactatatggacgtatcaacccagcaggtt
gtctccgttggtgcttcactgatcccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaagcggtgccaaccctgcgtgctgacaagccgctggta
ggtaccggtatggaacgtgccgtagcggttgactccggtgttactgccgtagccaaacgt
ggtggtgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgatatttataacctgaccaagtacacccgttctaac
cagaacacctgtatcaaccagatgccttgtgtgaatctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccgtctacagacctgggtgaactggcattgggtcagaacatg
cgcgtcgcgttcatgccttggaacggctacaacttcgaagactccatcttggtctccgaa
cgtgtagtacaggaagatcgcttcaccaccatccacatccaggaactggcttgcgtgtct
cgcgacaccaaactggggccggaagagatcaccgccgacatccctaacgtgggtgaagca
gcgctctccaagctggatgagtccggtatcgtgtatatcggtgcagaagtgaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccaaacggcgtttccggtacggttatcgacgtgcaggtctttacccgcgatggcgtggac
aaagacaaacgtgcgttggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagctggcctgttcgctcgtatccatgcggtactggtt
tctggtggtatcgaagccgagaagctgagcaaactgccacgcgatcgctggttggaactg
ggcctgaccgacgaagacaagcaaaaccagctggagcagctggcagagcagtacgacgaa
ctgaaatccgacttcgagaagaagctggatgccaagcgtcgtaagatcacccaaggcgac
gatctggcaccaggcgtgctgaaaatcgtcaaggtgtatctggccgttaagcgtcagatc
caaccgggtgacaagatggcaggccgtcacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggttgacatcgttctgaacccg
ctgggcgttccatcgcgtatgaacatcggtcagatcctggaaactcacctgggtatggcg
gcgaaaggcattggtgagaagatcaaccaaatgctcaagcagcaccaggaagtggccaag
ctgcgtgaattcatccagaaggcttacgatctgggtgacggcgtttgccagaaagttgac
ctgaacaccttcaccgacgacgaagtcttgcgtctggcagagaacctgaaaaaaggtatg
ccgatcgcaaccccagtcttcgatggtgcgaaagagtcagaaatcaagcaactgctggaa
atgggcggtatcccgacttcaggtcagattacgctgtttgatggccgtaccggcgagcag
ttcgagcgccaggtaaccgtcggctatatgtacatgctgaaactgaaccacttggttgac
gataagatgcacgcgcgttctaccggttcttacagcttggttactcagcagccgctgggt
ggtaaggcgcaattcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagca
tacggcgcagcttacaccttgcaggaaatgcttaccgttaagtcggatgacgtcaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgtatggaaccaggcatgccg
gagtccttcaacgtactgttgaaagaaatccgctcgctgggtatcaacatcgaactggaa
ggcgactaa
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