Serratia sp. JSRIV001: KGP17_01970
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Entry
KGP17_01970 CDS
T11585
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
serv Serratia sp. JSRIV001
Pathway
serv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
serv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KGP17_01970 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serv03019
]
KGP17_01970 (rnr)
03016 Transfer RNA biogenesis [BR:
serv03016
]
KGP17_01970 (rnr)
Enzymes [BR:
serv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KGP17_01970 (rnr)
Messenger RNA biogenesis [BR:
serv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KGP17_01970 (rnr)
Transfer RNA biogenesis [BR:
serv03016
]
Prokaryotic type
tRNA degradation factors
KGP17_01970 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNase_II_C_S1
Rho_RNA_bind
T1RH-like_C
Motif
Other DBs
NCBI-ProteinID:
UAN46348
LinkDB
All DBs
Position
452104..454623
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AA seq
839 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELGNELNLSGEEALEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGRKDDLYLSAEQMKMAIH
GDVVLAQPLGEDRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDGRLSFDILIPA
DSVSGARMGFMVVVELTQRPTRRTKAVGKIVEILGDKMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLSEQVPEAAKKGRVDLRHLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGTSVYFPSEVVPMLPEVLSNGLCSLNPQVDRLCMVSEMTIS
ASGRLSSFKFYEAVMSSHARLTYTKVWHILQGDQELREQYHPLVKHLQELHALYKVLDQA
RAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMIMANVAAARFVEKHNEP
ALFRVHDRPSDDHISALRSVLSELGLTLGGGLKPQPKDYATLMDEVSERPDREMLQTMLL
RSMKQAIYDPENRGHFGLALASYGHFTSPIRRYPDLSLHRAIKYVLAKEQGDQKERWTPT
GGWHSDLEEMLQLGMHCSMTERRADEATRNVADWLKCDFMQDHVGEVFSGVIASVTGFGF
FVRLSDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESSGMVYRLGDTVEIRVEAVHMDERK
IDFALVSSTRKPRGEGKTERERAKNGGQRTLRDGAGAGRSQAQRKRRGGKTPANFEPDSA
FRKKEGAKAKPADKVKPDPKAKAKTDPKAKAKKASDKTKKIAAATKAKRASKKKGAEQG
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatatgaatccccaattcctagc
cgcgaatttattctggcccatttggcgaaacgtgaaacgccggccagccgcgaagagttg
ggcaatgaactgaacttatccggcgaagaagcgctggaagccctgcgccgtcgcctgcgt
gcgatggaacgtgatggccagttggtctttacccgccgccagtgctatgccctgccggaa
cgtctggacctgctgcgtggcacggtgatcggccaccgcgatggcttcggcttcttgcgg
gttgaagggcgtaaagacgacctttatctctccgccgagcaaatgaaaatggccatccac
ggtgatgtggtgttggctcaaccgctgggcgaagaccgcaaaggccgccgcgaagcgcgt
atcgtgcgcgtcctggtgcctaaaaccagccagattgttggtcgctacttcaccgatgcc
ggtaccggcttcgtggtgccggatgacggccgcctgagcttcgatattctgatccctgcc
gactcggtcagcggagcgcggatgggctttatggtggtggtcgagctgacccagcgccca
acgcgccgcaccaaagccgtgggcaaaatcgtcgagatcctgggcgataaaatgggcacc
agcatggcggtggatatcgcattgcgtacccatgagatcccgcatacctggccacctcag
gtggagaagcaggttgccgacctcagtgagcaggtgccggaggccgccaagaaagggcgt
gtggatctgcgtcacctgccgctggtcaccattgatggcgaagatgcccgcgatttcgat
gatgccgtgtactgcgagaagaaacgcggtggcggctggcgcctgtgggtcgcgattgca
gatgtcagctactatgtgcgccctcgcacggcgttggatgacgaagcccgtagccgtggc
acctcagtctacttcccgtcggaagtggtaccaatgctgccggaagtgctttccaacggc
ctgtgctcgctcaacccgcaggtcgaccgcctgtgtatggtgagtgagatgacgatctcc
gcatcgggccgtctgtcttcgtttaaattctacgaagcggtaatgagctcccatgcgcgc
ttaacctacaccaaggtctggcatatcttgcagggcgatcaggagctgcgcgagcagtat
catccgttggtcaaacacctgcaggagctgcatgcgctgtataaagtgctggatcaggct
cgtgccgaacgcggtggtattgccttcgaaaccgaagaagccaagtttatcttcaacgcc
gagcgccgtattgagcgcgtagagccaacggtacgtaatgacgcgcacaaactgatcgaa
gagtgcatgatcatggcgaacgttgctgcggcgcgctttgttgagaagcataacgaacct
gcgctgttccgcgtgcacgatcgcccaagcgacgatcacatttccgcattgcgcagcgtg
ttgagcgaactgggcctgaccctgggtggaggcctgaagccgcagccaaaagattacgcc
actttgatggacgaagtatcggaacgcccggaccgcgaaatgctgcaaaccatgctactg
cgttcgatgaaacaggcgatctacgatccggaaaaccgtggtcacttcggcctggcgttg
gcctcttatggccactttacttcgccgatccgtcgttatccggacctgtcgttgcatcgc
gccatcaagtacgtgctggcgaaagagcaaggtgatcagaaagagcgttggacgccaacc
ggaggctggcacagcgatctggaagagatgctgcaactgggtatgcactgctcgatgacc
gagcgccgtgccgatgaagctacgcgtaacgtggcggactggctgaagtgcgactttatg
caggatcacgtcggtgaagtgttcagcggcgttattgccagcgtcaccggctttggtttc
ttcgtccgcctgagcgatctgtttatcgatggtctggtacacgtgtctacgctggataac
gattactatcgctacgataatatcggccagcgtctgatcggcgaatcttccggcatggtc
tatcgcctgggggatacggtggagatccgcgttgaggccgtgcatatggacgaacgcaag
atcgacttcgccctggtttccagtacccgcaaaccgcgtggtgaaggcaaaaccgagcgc
gaacgtgccaagaatggcggccagcgtacgctgcgcgacggtgccggagcgggccgtagt
caggctcaacgtaaacgccgtggcggcaagacgcctgccaactttgagccagacagcgcc
ttccgtaaaaaagagggggccaaggccaaacccgcagacaaggtgaagccagacccgaag
gcgaaagcgaaaaccgatccgaaggcgaaagccaaaaaagcgtctgacaaaaccaaaaag
atagcggccgcgaccaaagccaagcgtgccagcaagaagaaaggtgccgagcagggttaa
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