Serratia sp. JSRIV001: KGP17_04180
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Entry
KGP17_04180 CDS
T11585
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
serv Serratia sp. JSRIV001
Brite
KEGG Orthology (KO) [BR:
serv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
serv03009
]
KGP17_04180 (rlmD)
Enzymes [BR:
serv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KGP17_04180 (rlmD)
Ribosome biogenesis [BR:
serv03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KGP17_04180 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
MTS
Methyltransf_11
FtsJ
Cons_hypoth95
Methyltransf_4
Methyltransf_ANTKMT
PabTrmU54_TRAM_dom
CMAS
Methyltransf_15
Methyltransf_23
DOT1
Motif
Other DBs
NCBI-ProteinID:
UAN46763
LinkDB
All DBs
Position
940104..941441
Genome browser
AA seq
445 aa
AA seq
DB search
MAQFYSPKRRVTTRQASQIFTVTVTDLDPFGQGVARHEGKAVFIPGVLPGEQAEIQLTQD
KRQFAKGQLRQLLNCSIQRVEPRCPHFGVCGGCQQQHVSEALQQQSKAAALGRLIYRETG
VTPQQEPVIAGPQYGYRRRARLGLQWQPQQHRLLMGFHQAASSDLVAVKQCPVLAPELER
LLVPLYQCLSGLQAVQRLGHAELVLADNGPVLVLRHLDALKQGDRQALQQFAQQNGTTVY
LAPDSERLEKLCGEAPYYQVDGLRLDFNPRDFIQVNDAVNQQMVAQALEWLKIEPNDRIL
DLFCGMGNFTLPLAKRAKAVVGIEGVATLVANGQYNADRNRLSNVSFFHENLEDDVARQP
WAAQGFDKVMLDPARAGAAGVMSHIVKLAPERVVYISCNPTTLARDSKVLLDAGYRLARV
RMLDMFPHTGHLESMALFIHGSRKK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccgaaacgccgcgtgacgacccggcaagcttcacaaatattc
acggtgacggtaacggacctcgatccatttggccagggagtggcacgccatgaaggcaaa
gcggtatttatccccggcgttttgccgggggaacaggccgaaattcagttgacgcaggac
aaacggcaattcgccaaaggtcagctcaggcaactgttaaattgcagcatacaacgcgtt
gagccgcgctgcccacactttggtgtgtgcggaggttgccagcagcagcatgtctccgag
gcgctgcaacagcaaagcaaggcggcggcgctggggcgcctgatctaccgcgaaaccggg
gtgacgccgcagcaggaaccggtgattgccgggccgcagtatggttaccgtcggcgggcg
cggctggggttacagtggcaaccccagcagcatcgtttgctgatgggttttcaccaggcc
gcctcgtccgatctggtggcggtgaagcagtgcccggtattggcgccggaactggaacgg
ctgctggtgccgttgtatcaatgcctgagcggcttgcaggccgtgcagcgtctgggccat
gcggagctggtgttggcggataacggaccggtgctggtgttgcgccacctggatgcactc
aagcagggcgatcgtcaggctttgcagcagtttgcccagcaaaatggcaccaccgtttat
ttggcaccggatagcgaacggctggaaaaactgtgcggtgaagcgccttattatcaggtt
gacgggctacgcttagacttcaatccgcgcgattttattcaggtaaatgatgcggtaaat
cagcaaatggtggctcaggctcttgaatggctcaagattgaacccaatgatcgcatattg
gatctgttttgtggcatgggcaactttaccctgccgctggccaagcgggccaaggcggtg
gtcgggattgaaggtgttgccacgctggtagcgaatgggcaatataatgccgataggaat
aggctcagtaatgtctcctttttccatgaaaatctggaagatgacgttgcgcgacaacca
tgggcagcacagggatttgataaggtgatgctggatccagcccgcgcaggcgcggctggg
gtgatgtcacacattgtaaaactggcgccagagcgcgtggtgtatatatcctgtaacccc
acgacgttggcacgcgacagcaaagtgttgctggacgccggttatcgtcttgcgcgtgtg
cggatgttggatatgttcccgcacacggggcatcttgaatccatggcgctgtttatccac
gggtcgcggaaaaagtag
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