Serratia sp. JSRIV001: KGP17_21260
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Entry
KGP17_21260 CDS
T11585
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
serv Serratia sp. JSRIV001
Pathway
serv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
serv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KGP17_21260 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serv03400
]
KGP17_21260 (recB)
Enzymes [BR:
serv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KGP17_21260 (recB)
DNA repair and recombination proteins [BR:
serv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KGP17_21260 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UAN44930
LinkDB
All DBs
Position
complement(4600647..4604195)
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AA seq
1182 aa
AA seq
DB search
MTKGVPQRLDPLTLPLFGERLIEASAGTGKTFTIGALYLRLLLGLGQAAAFPRPLTVEEI
LVVTFTEAATEELRGRIRSNIHALRIACVRGHSSDPLFAALMAEIGDLSEAAAQLLAAER
QMDEAAIYTIHGFCQRMLTHNAFESGILFEQTLVQDELPLRRQACADFWRRHCYPLPLGV
ARAVSQEWSGPEALLSDLSGYLHGEAPTLRQPPKDEETVLMRHEQIVARIDALKAQWQAA
ADLEALISQSGVDKRSYSSKHLPNWLNKVGEWAGQETEDYQLPKELEKFCQSVLLEKTKK
GEAPRHPLFVAIDELFAEPLTLRDLIMARALSEIRLSIQQEKRQRAELGFDDLLSRLDAA
LQSAGGEQLALAIRQRYPVAMIDEFQDTDPQQYRIFQKLYVGREECGLLLIGDPKQAIYA
FRGADIFTYMKARSEVSAHYTLETNWRSSPAMVGSVNRLFAQVEKPFLFGQIPFIEVAAA
AKNQELVFEWQNKPQPAMQFWLQPGDGAGVSDYQQLMARLCAAQIRDWLSAGQAGEAWLV
KGEQRRHVQASDITILVRSRAEAALVRDALSALAIPSVYLSNRDSVFDTPEAKDLLWLLQ
AVLAPEQERTLRCALATGLLGLDALTLDGLNHNESAWDDLVNEFDEYRSHWLRRGVLPML
REVMAKRHLAENLLASPGGERRLTDVMHLGELLQEATAQLDGEHALVRWLAQQIAQPNRQ
SDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQVLYHDRQTFKALLDLN
ANEESVAWAEEERLAEDLRLLYVALTRSVYHCSIGIAPLFLGTRKKQGDTDLHRSALGYL
VQAGQAGDAAYLQNCLQQLATQGIALSLVDAPGEQSWQPQMAAAAELTARQFPRRMQDFW
RVTSYTGLQQHGSSRMQELLPRLDVDAVGEGDTATPPALTPHTFPRGAAPGTFLHSLFEE
LDFTQPLDEQWLLAQLQQQGLEEHWLPVLSGWMQVLLNAPLNSSGVALSALPAGARQAEL
QFYLPIGGLLQAQQLDELVKRYDPLSAGCPALDFQQVQGMLKGFIDLVFCWQGKYYLLDY
KSNWLGEDSSAYTQEAMARAMAEHRYDLQYQLYTLALHRYLGHRLADYDYQRHFGGVIYL
FLRGVDAEHEGNGIFACRPEFALVEGMDRLFSGETVDVEDGQ
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaggcgttcctcagcggcttgatccactgacgttgccgctgtttggtgaacgg
ctgatcgaagcctcggcagggacagggaagaccttcactatcggtgctttgtatctgcgc
ctgctgcttggcttaggccaggcagcagcgtttccacggccgctcacggtagaagagatc
ctggtagttacctttaccgaagcggcgacggaggaactccggggccgcattcgcagtaat
atccacgcattacgcattgcctgcgtacgcgggcatagctcagacccgctgtttgccgcg
ctgatggcggagattggcgatctgtcagaggccgcagcgcaattgctggctgccgagcgc
cagatggacgaagcggcgatctacactatccacggtttttgtcagcgaatgctcactcac
aacgcattcgagtcgggcattctgtttgaacaaacgctggtgcaggacgaactgccgttg
cgccgccaggcctgcgccgatttttggcggcgtcactgttatccattgccactgggcgtt
gcccgggcggtcagtcaggagtggagcggcccagaggctttgttgagcgatctctcgggc
tatctgcatggcgaagctcccactctgcgtcagccaccgaaagatgaagaaacggtgctg
atgcgccatgaacagatagttgcgcggatcgatgccctcaaggcgcaatggcaggcggcg
gccgatctggaagcactcatcagtcagtctggcgtcgacaaacgcagctacagcagcaaa
catttacccaactggctgaataaggtgggggaatgggcggggcaggaaaccgaagattac
cagttacccaaagagctggagaagttctgccaatcggtgctgctggagaaaaccaaaaaa
ggtgaggctccgcggcatccgctgtttgtggcgattgatgagctgtttgccgaacccttg
accctgcgtgacctgatcatggcacgggcgctgagcgaaatacgcctttccattcaacag
gaaaaacgccagcgtgccgaactggggtttgacgatctgctcagcaggctggatgcggca
ctgcaaagcgcaggtggtgaacaactggcgctggcgatccgtcagcgttatccggtggcg
atgatcgatgagtttcaggataccgacccacagcagtaccggatcttccagaaactgtat
gttggccgggaagagtgtggcctgctgctgatcggagatcccaaacaagcgatttacgcc
ttccgtggggcagacatttttacctatatgaaggctcgttcagaggtaagtgcccactat
accttagagaccaactggcgctcatcaccggcgatggttggcagcgttaaccgcctgttt
gctcaggtggaaaaaccgttcctgtttggccaaatcccgtttatcgaggtggctgccgca
gcgaagaatcaggaactggtcttcgagtggcagaataagccgcaaccggctatgcaattt
tggctgcaacctggggatggggccggagtaagtgattaccaacaattaatggcgcgcttg
tgtgccgcccagatccgcgactggctgagtgccgggcaggccggagaagcctggctggtc
aaaggggagcaacgccgccacgttcaggcttcggatattaccattctggtgcgtagccgc
gccgaagcggcgttggtgcgtgatgcactgagcgcgctggccattccctcggtttacctt
tccaaccgtgacagcgtgtttgatacgccggaagccaaagatttactgtggctgctacag
gcggtactggctcccgaacaggagcgaaccttgcgttgcgctttggccaccggcctattg
gggttggatgccttgacgctggatggactaaaccataacgagtccgcttgggatgatttg
gtcaacgagtttgatgaatatcgtagccactggttacgtcgtggcgtattaccaatgctg
cgtgaggtgatggccaagcggcatctggcagaaaacctgctggccagccctgggggggag
cgccgtttgaccgatgtcatgcacctgggggagctgttgcaggaagccacggcgcagctg
gacggtgaacacgcgctggtgcgctggttggcgcagcagatcgctcagccgaatcgccag
tcggacaatcagcaactgcggctggaaagcgaccgtcatctggtgcaggtgatcaccatc
cacaagtcgaaagggttggagttcgatctggtatggctgccttttgtggggaatttccgc
cagcagcaacaggtgctgtaccacgatcgccagacctttaaagccctgctggatctgaat
gccaacgaagaaagcgtggcctgggcggaagaggaacggttggcagaggatttgcgcctg
ctatacgtggcgctgacccgttcggtgtatcactgcagcatcggtattgcgccgttgttc
ctcggtacgcgcaagaagcagggcgatacggatttgcaccgcagcgcgctgggatatctg
gtgcaggccgggcaggcgggcgatgcggcctatctgcaaaactgcctgcaacagctggca
actcagggcatcgcgctgtcgctggtggatgcaccgggtgaacaaagctggcagccacag
atggccgccgccgcagaactgacggccaggcagtttccacgcaggatgcaggatttctgg
cgggttaccagctataccggcttgcaacagcatggctcaagccggatgcaggagctgttg
ccgcgcctggacgttgatgccgttggtgagggcgatacggctacaccacccgcattgact
ccccatactttcccgcgcggcgcggcacctggaaccttcctgcacagcctgtttgaggag
ttggactttacccaaccgctagatgaacagtggctgttggcgcagttacaacagcaaggg
ctggaggagcattggttgccggtattatccggctggatgcaggtgttgctgaatgcgcca
cttaatagcagcggcgtcgcgctatctgccttaccggcgggagccaggcaggcagaatta
cagttctatctgccgatcggtggcttgctgcaagcgcagcagttggatgaactggtaaaa
cgctacgatcccctttctgctggctgcccggcgctggatttccaacaggttcagggcatg
ctgaaaggctttatcgatctggtgttctgctggcagggcaaatattacctgctggattac
aaatccaactggctgggcgaagacagcagcgcctatacccaagaggcgatggcgcgggcg
atggcggaacaccgctacgatctgcaataccaactctataccttggcgctgcaccgctat
ctggggcatcgtctggcggattacgattaccagcgccattttggcggggtaatttatctg
tttttacgcggggtagatgccgagcatgagggcaacggtatttttgcctgtcgtccggag
ttcgctctggttgaaggaatggatcgcctgtttagcggtgaaacggtcgacgttgaggat
gggcaatga
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