KEGG   Ornithinimicrobium pratense: FY030_01810
Entry
FY030_01810       CDS       T06221                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
serw  Ornithinimicrobium pratense
Pathway
serw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:serw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FY030_01810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:serw03400]
    FY030_01810
Enzymes [BR:serw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FY030_01810
DNA repair and recombination proteins [BR:serw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FY030_01810
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: QFG67628
UniProt: A0A5J6V1V2
LinkDB
Position
complement(397144..397992)
AA seq 282 aa
MSSQSVSVAGRTLKVSNLDKVLYPSTGTTKGEVLTYYVTHAEQILPELEGRPVTRIRWPE
GVEKAHFFEKNLPSGAPEWLPRVTVPTPGSSRGHSHLTFPLVTDLAALVYLVNLGSLELH
VPQWRVDEQGEPLPPDRLVVDLDPGPGTGLAECARVALMVRERLEAVGLSTRPVTSGSKG
MQLYADLEGTRTSEEVSAVAKALAEQLAVEHPDLVTAKMAKSLRPGRIFLDWSQNNGAKT
TICPWSLRGRQRPQVALPRTWDEVEAATTGQVELTQVTLEEV
NT seq 849 nt   +upstreamnt  +downstreamnt
gtgagcagccagagcgtcagcgtcgccgggcggaccctcaaggtctccaacctggacaag
gtgctctacccgagcaccggcaccaccaaaggcgaggtgctcacctactacgtcacccac
gccgagcagatcctccccgagctggaggggcgcccggtcacccgcatccgctggcccgaa
ggggtggagaaggcgcacttcttcgagaagaacctgccctcgggtgcccctgagtggctg
ccacgggtgacggtgccgaccccgggatcctcccgcgggcactcccacctgaccttccct
ctggtcaccgacctggcggctttggtctacctggtcaacctgggcagcctggagctacac
gtgccgcagtggcgggtggatgagcagggtgagcccctgccgccggaccggctggtggtg
gacctggaccccggaccggggacgggcctggcggagtgcgcacgggtcgcactcatggtg
cgcgagcggctggaggcggtggggctgagcacccggccggtcaccagcgggtccaaggga
atgcagctctacgccgacctcgaaggcacccgcacctccgaggaggtcagcgcggtcgcc
aaggcgctggccgagcagctggccgtcgagcaccccgacttagtgacggccaagatggct
aagtcgctgcggcccggacgcatcttcctggactggagccagaacaacggagcgaagacc
acgatctgcccgtggtcgctgcgcggccggcagcgaccgcaggtggccttgccccggacg
tgggacgaggtcgaggcggcgacgaccggccaggtcgagctgacccaggtcacgctggag
gaggtgtag

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