Ornithinimicrobium pratense: FY030_01810
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Entry
FY030_01810 CDS
T06221
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
serw
Ornithinimicrobium pratense
Pathway
serw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
serw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FY030_01810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
serw03400
]
FY030_01810
Enzymes [BR:
serw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FY030_01810
DNA repair and recombination proteins [BR:
serw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FY030_01810
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QFG67628
UniProt:
A0A5J6V1V2
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Position
complement(397144..397992)
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AA seq
282 aa
AA seq
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MSSQSVSVAGRTLKVSNLDKVLYPSTGTTKGEVLTYYVTHAEQILPELEGRPVTRIRWPE
GVEKAHFFEKNLPSGAPEWLPRVTVPTPGSSRGHSHLTFPLVTDLAALVYLVNLGSLELH
VPQWRVDEQGEPLPPDRLVVDLDPGPGTGLAECARVALMVRERLEAVGLSTRPVTSGSKG
MQLYADLEGTRTSEEVSAVAKALAEQLAVEHPDLVTAKMAKSLRPGRIFLDWSQNNGAKT
TICPWSLRGRQRPQVALPRTWDEVEAATTGQVELTQVTLEEV
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagccagagcgtcagcgtcgccgggcggaccctcaaggtctccaacctggacaag
gtgctctacccgagcaccggcaccaccaaaggcgaggtgctcacctactacgtcacccac
gccgagcagatcctccccgagctggaggggcgcccggtcacccgcatccgctggcccgaa
ggggtggagaaggcgcacttcttcgagaagaacctgccctcgggtgcccctgagtggctg
ccacgggtgacggtgccgaccccgggatcctcccgcgggcactcccacctgaccttccct
ctggtcaccgacctggcggctttggtctacctggtcaacctgggcagcctggagctacac
gtgccgcagtggcgggtggatgagcagggtgagcccctgccgccggaccggctggtggtg
gacctggaccccggaccggggacgggcctggcggagtgcgcacgggtcgcactcatggtg
cgcgagcggctggaggcggtggggctgagcacccggccggtcaccagcgggtccaaggga
atgcagctctacgccgacctcgaaggcacccgcacctccgaggaggtcagcgcggtcgcc
aaggcgctggccgagcagctggccgtcgagcaccccgacttagtgacggccaagatggct
aagtcgctgcggcccggacgcatcttcctggactggagccagaacaacggagcgaagacc
acgatctgcccgtggtcgctgcgcggccggcagcgaccgcaggtggccttgccccggacg
tgggacgaggtcgaggcggcgacgaccggccaggtcgagctgacccaggtcacgctggag
gaggtgtag
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