Ornithinimicrobium pratense: FY030_04765
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Entry
FY030_04765 CDS
T06221
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
serw
Ornithinimicrobium pratense
Brite
KEGG Orthology (KO) [BR:
serw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
serw03019
]
FY030_04765 (hrpA)
Enzymes [BR:
serw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FY030_04765 (hrpA)
Messenger RNA biogenesis [BR:
serw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FY030_04765 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
T2SSE
nSTAND_NTPase5
nSTAND3
AAA_30
NACHT
AAA_25
ResIII
PhoH
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QFG68116
UniProt:
A0A5J6V4L3
LinkDB
All DBs
Position
1056471..1060766
Genome browser
AA seq
1431 aa
AA seq
DB search
MPEPEPTSRPRRPPRRGRAGRAGVGPVGQDAQTGGTGHGGQGERGGRGGRGRHTPGRQGS
GQRDRHSRRAELVEARRAALPASDQLHYPPELPVSERREEIRALIRDHQVVIVAGETGSG
KTTQLPKICLELGRGVEGMIGHTQPRRIAARSVAERVSEELGVELGTTVGYQVRFTDQSR
QDTLIKVMTDGILLSELQRDRLLSRYDTLIIDEAHERSLNVDFILGYLKQLLAQRPDLKV
VITSATIDVERFALHFADAEGRPAPVIEVSGRTYPVEVRYRPLVREAAPTRGGADAAPVQ
IEIDQVTGVVEAVEELWTEGTGRDGKGEDVLVFCSGEREIRDVVDALDGLQLPQTEILPL
YGRLSAAEQHRVFSRHAGRRIVVSTNVAETSLTVPGIRYVVDTGTARISRYSQRLKVQRL
PIEPISQASANQRAGRCGRLADGIAIRLYSEEDFAARPQFTDPEILRTNLASVILQMTSL
GLGEIEKFPFLEPPDSRQINDGVRLLTELQAIDPTAPAHLPRKRITPYGRAIVGLPVDPR
LARMLVEAERQGALKEVLVIVSALSIQDVRERPADKQQQADQAHARFRRPGGVPRGEAGR
PGAAQDAGQDRRGADKEPVRVQGAGGQGPKQATSDAVDSDFVVLLNLWRYLQRQQKDLSG
SAFRRLCKAEFLHYLRVREWQDLHTQLRQAAKSLGLQVNEHAAQEEQVHRSLLAGLLSHV
GMWERENRAYLGARNARFVLQPGSVLHRRNPDWVMAAELVETTRLWARTNAVVDPAWVEE
AGAHLVKRSYSEPRWSRSSGSAVADERVTLYGIPLVAGRPVPLGRIDPETARELFIRTAL
VEEDWDTRHDFFHANRKLVKELAQLEARARRRGILADDETLYAFYDERIPPEVVSGAHFD
TWWKQARRQDPHLLTFTEELLIGEGADAVSADDFPTQWVQGELAFPLTYQFEPGADADGV
TVHLPVEVLNQVAEDGFDWLVPGMHEELVTALVKSLAKDIRRNFVPAPDHARAALRGMQE
RGSVGALPVREALAEELTRRGLLRVHASDFDWERMPDHLKMTFRVERAVRPGRSSESGVG
QGEAKGGGQENGRQRGQGKGRGRGRVEVLGEGKNLAALQAELAGQVRTTMAAAASGVERT
GLTTWPVDLDPLPENFSRQVGPRAVQGFPALVDTGGTVDVRVLATRSEADRETRRGVRRL
LLLGTQPPWKRLLALLTNQQKLSLGHNPHGSVPALLEDALAAAVDSVVAEQPHGIVRTPA
QFEAALVGVRQHSVPRVLQIVESLVPILDTAREVSLRLQRLDAPAAADMAVDLRRQLDAL
VRPGFVAEVGHARLPRMVIWLRAMSERLDKGVQDLPRDRQRMEEVHVVEEELDTFLAKLP
PHRRQDPDVLDIVWSLQELRVSLFAQRLGTAGPISAKRIYAAMDRAEDATG
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagcccgagcccacctcccgaccgcggcgcccgcctcgtcggggacgagctggc
cgagccggcgtcggacccgtcggacaagacgcccagaccggaggaacgggtcacggcggg
cagggtgaacgtggcggacggggcggacgggggcggcatacccccgggcgtcagggaagc
ggccaacgggatcgccacagcagacgcgccgagctggtcgaggcgagaagggcggccctg
cccgcctcggaccagttgcactacccgcccgagctgccggtcagcgagcggcgcgaggag
atccgcgcgctcatccgcgaccaccaggtcgtgatcgtggccggtgagaccggctcgggc
aagacgacccagctgcccaagatctgcctcgagctcgggcgcggggtcgaggggatgatc
ggccacacccaaccccgccggatcgccgcgcgctcggtggccgagcgggtcagcgaggag
ctgggcgtcgagctcggcaccacggtcggctaccaggtgcgcttcaccgaccagtcccgg
caggacaccttgatcaaggtgatgaccgacggcatcctgctctccgagctgcagcgggac
cggctgctgagccgctacgacacgctcatcatcgacgaggcgcacgagcgcagcctcaac
gtcgacttcatcctgggctacctcaagcagctgctggcccagcgccccgacctcaaggtg
gtcatcacctcagcgaccatcgacgtcgagcgcttcgcgctgcacttcgccgacgctgag
ggccgccccgcgccggtcatcgaggtgagcgggcggacctaccccgtcgaggtgcgctac
cgccccctggtgcgcgaggctgcgcccacccggggtggcgcggacgccgcgccggtccag
atagagatcgaccaggtcaccggggtggtggaggccgtcgaggagctgtggacggagggc
accggccgggacggcaagggggaggacgtgctggtcttctgctccggcgagcgcgagatc
cgcgacgtcgtggacgcgctcgacggcctgcagctgccgcagaccgagatactgccgctc
tacggtcggctctctgcggccgagcagcaccgcgtcttctcccgccacgcagggcggcgg
atcgtggtgtccaccaacgtggccgagacctcactgaccgtccccgggatccggtatgtc
gtggacaccggcaccgcgcgtatctctcgctacagccagcgactgaaggtccagcgcctg
ccgatcgagccgatcagccaggcctcggccaaccagcgggccggccggtgcggccggctg
gcggacgggatcgcgatccggctctatagcgaggaggacttcgcagcgcgcccgcagttc
accgacccggagatcctgcgcaccaacctggccagcgtcatcctgcagatgaccagccta
gggctgggcgagatcgagaagttcccgttcctggagccgccggactcccgtcagatcaac
gacggtgtgcggctgctcaccgagctccaggccatcgatcccacggccccggcgcacctg
ccgcgcaagcggatcaccccctacggccgggcgatcgtcggactgcctgtcgacccccgc
ctggcccgcatgctcgtcgaggccgagcggcagggggcgctgaaggaggtgctggtcatc
gtgtcggcgctgtccatccaggacgtccgggagcgccccgcagacaagcagcagcaggcc
gaccaggcacacgcccggttccgcagaccgggtggcgtgccgcggggagaggccggccgg
ccgggcgccgcccaggacgcggggcaggatcggcgtggcgcggacaaagaaccggtccgg
gtgcagggtgcggggggacaggggccgaaacaggccacgtccgacgccgtcgactccgac
ttcgtcgtcctgctcaacctctggcgctatctgcagcgccagcagaaggacctgtccggc
agcgccttccgacggctgtgcaaggcggagttcttgcactacctgcgcgtccgggagtgg
caggacctgcacacccagctgcggcaggcggccaagtcgctggggctgcaggtcaacgag
cacgccgcgcaggaggagcaggtccaccggtcgctgctggccgggctgctctcgcacgtg
gggatgtgggagcgtgagaaccgcgcctacctgggcgcccgcaacgcccgcttcgtcctc
cagccggggtcggtgctgcaccggcgcaaccccgactgggtcatggcagcggagctggtc
gagacgacccggctgtgggcgcgcaccaacgccgtggtcgacccggcctgggtggaggaa
gccggagcccacctggtcaagcgctcctacagcgagccccgctggtcgcgctccagcggc
tcggcggtggcggacgagcgggtgacgctctacggcatacccctggtggccggtcgtccc
gtgccgctggggcggatcgatcccgagacggcgcgtgagctgttcatccgcaccgccctg
gtggaggaggactgggacacccgccacgatttcttccacgccaaccgcaagctggtcaag
gagctggcccagctggaggcgcgcgcccggcggcggggcatcctcgctgacgacgagacg
ctctatgccttctacgacgagcggatcccccctgaggtggtctcgggggcgcacttcgac
acctggtggaagcaggcccggcggcaggacccacacctgctcaccttcaccgaggagctg
ctgatcggcgagggggcggacgcggtgagcgcggacgacttccccacgcagtgggtccag
ggcgagctggccttcccgctgacctaccagttcgagcccggcgcagacgccgacggcgtg
accgtgcacctgccggtggaggtgctcaaccaggtcgcggaggacggcttcgactggctg
gtcccggggatgcacgaggagttggtgaccgccctggtcaagtcgttggccaaggacatc
cggcgcaacttcgtgccggcccctgaccacgcgagggccgccttgaggggtatgcaggag
cgaggctcggtgggtgcgttgccggtccgggaggcgctggcggaggagctgacccggcgc
ggcctgctgcgggtgcacgcctcggacttcgactgggagcgaatgccggaccacctgaag
atgaccttccgggtcgagcgggcggtgcgcccggggaggtcgtccgagtccggggtgggg
cagggcgaggccaagggcggtgggcaggagaacggtcgacagcggggccagggcaagggg
cgcggccggggccgggtcgaggtgctgggggagggcaagaacctggctgcgctgcaggcc
gagctggccggccaggtgcgcacgacgatggccgccgcggccagcggcgtcgagcggacc
ggcctgaccacctggccggtcgatctcgacccgctgccggagaacttcagccgccaggtg
ggaccccgtgcggtgcagggtttcccggcgctcgtcgacaccgggggcacggtggacgtc
cgggtgctggcgacgcgctccgaggcggaccgggagacccggcgcggcgtgcgccggctg
ctgctcctgggcacccagccgccgtggaagcgcctgctggcgctgctgaccaaccagcag
aagctctcgctgggacacaacccccacggctcggtcccggcgctgctcgaggacgcgctt
gcggccgccgtcgactcagtggtggcagagcagccgcacgggatcgtgcgcacgcccgcg
cagttcgaggcggcgctggtgggagtgcggcagcacagcgtgccgcgggtgctgcagatc
gtcgagtcgctggtgccgatcctggacaccgcgcgggaggtctcgctgcggttgcagcgc
ctggacgccccggcggcagccgatatggccgtcgacctgcgccgccagctggacgccctg
gtgcggccgggtttcgtcgccgaggtcgggcacgcccgcctgccgcggatggtcatctgg
ctgcgggctatgagcgagcggctcgacaagggcgtgcaggacctgccccgcgaccggcag
cggatggaggaggtgcacgtggtggaggaggagctcgacaccttcctggccaaactgccc
ccgcatcgccggcaggaccccgacgtgctggacatcgtctggtcgctgcaggagctgcgg
gtctccctcttcgctcagcgcctgggcaccgcgggcccgatctcggccaaacggatctac
gcagccatggaccgtgccgaggacgcgaccggctga
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