Salmonella enterica subsp. arizonae: SARI_01775
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Entry
SARI_01775 CDS
T00627
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ses
Salmonella enterica subsp. arizonae
Pathway
ses03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ses00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SARI_01775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ses03400
]
SARI_01775
Enzymes [BR:
ses01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SARI_01775
DNA repair and recombination proteins [BR:
ses03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SARI_01775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABX21661
UniProt:
A9MG99
LinkDB
All DBs
Position
1705408..1708854
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHVGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY
RLDFFDDEIDSLRLFDADTQRTLEEVEVINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL
ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKTANTNLGFQKLPD
LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDDARD
AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREHYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQILAEAAEGKIDILIGTHKLLQSDVKL
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaaacaacgttacacgctgccgacaaaagcgggcgatcagcgccagttgggc
gaacttaccggcgccgcctgcgctacgctggtggcagagatagccgaacgacatgtcggc
ccggtggtactcatagcgcctgacatgcaaaatgctctgcgactgcatgatgaaatccgt
cagtttaccgatcaaatggtcatgaacctggcggactgggaaacgctaccgtatgacagc
ttctccccgcatcaggaaattatctcttcgcgcctgtccacgctctaccagttgccgtcg
atgcagcgcggcgtcttgattgtaccggtaaacaccctgatgcagcgtgtttgcccgcat
agttatctgcatggtcatgcgctggtgatgaaaaaaggccagcggctgtcccgcgacgct
ctgcgcgcgcagcttgacagcgccggttatcggcatgtcgatcaggtgatggagcatggc
gaatacgcgacgcgcggcgcgctgttggatctcttcccgatgggcagcgaacagccttat
cgcctcgacttttttgatgatgaaatcgacagcctgcgcctgtttgacgcggacacccag
cgcactctggaggaagtcgaggtcatcaatttgttgcccgcgcacgaatttcctaccgac
aaagccgctattgagcttttccgtagccagtggcgcgatacctttgaggtaaaacgcgac
gccgagcacatctatcagcaggtcagcaaaggcaccctgcccgccgggatcgaatactgg
caaccgctctttttcagcgaaccgttaccgccattatttagctacttccccgccaatact
ctggtggtgaataccggctcgctggaaaccagcgccgaacgctttcaggccgatacgctg
gcgcgatttgaaaatcgcggcgtcgatcctatgcgcccgcttttaccaccggaagccctc
tggctacgggtggatgagctcttttccgagcttaaacgctggcctcgcctccagcttaaa
accgaccatctgccggaaaaaaccgccaataccaatctcggtttccagaaattaccggat
ttggctatccaggcgcagcagaaagcgccgctggacgcgctgcgtaagttcctcgaatct
ttcagcggcccggtgattttttcggtggaaagcgaaggacgccgcgaagcgctgggggaa
ctccttgcccgcataaaaattgcgccgaagcggattttacgtctggacgacgccagggat
gcgggacgctacctgatgattggcgccgcagaacatggctttatcgacacccaacgcaat
ctggcgctgatttgtgaaagcgatctcttgggtgaacgggtggcgcgtcgccgcctggat
tcccgtcgcacgatcaacccggatacgttgattcgtaatctggcggagctccacgtcggt
caaccggtagtgcatctggagcacggcgtcggacgctatgccggcatgaccactctggag
gctggcggcatcaagggtgaatatctgatgctcacttacgccaatgacgccaaactgtac
gtgccggtctcctcattgcatctgattagtcgctatgctggcggcgcggaagaaaacgcg
ccgctgcataaactgggcggcgacgcctggtcgcgcgcccggcaaaaagcggcggaaaaa
gtacgcgatgtggcggcggaactgttggatatttatgcgcaacgggcggcaaaagaggga
tttgcctttaagcacgaccgcgagcattaccagttattctgcgacagcttcccgtttgaa
acgacgcccgatcaggcgcaggcgattaacgccgtattgagcgatatgtgccaaccgctg
gcgatggaccggctggtgtgcggcgacgtcggcttcggcaaaacggaagtggcgatgcgc
gccgcgttcctggcggtggaaaaccataaacaggtggcggtactggtgccaaccacgttg
ctggcgcagcaacactatgacaacttccgcgaccgtttcgccaactggccggtacgcatt
gagatgctgtcccgctttcgcagcgccaaagagcaggcgcaaatcctggcggaggccgcc
gagggtaagatcgacattctgatcggtactcataaactgctacaaagcgacgtgaagcta
cgcgacctcggcctgctgattgtcgatgaggagcaccgtttcggcgtgcgccacaaagag
cgaattaaggcgatgcgcgccgatgtcgatattctgacgctcacggcgacgccaatcccg
cggacgctgaatatggcgatgagcggtatgcgcgatctctccattatcgccacgccccct
gcccgccgtctggcggtgaaaacctttgttcgcgagtacgatagcctggttgtacgggaa
gcaattctgcgtgaagttctgcgcggcggtcaggtttactatttgtacaatgacgtcgaa
aatatccagaaagccgcagagcggctggcggaactggtgccggaagcgcgaatcgccatt
ggtcacggccagatgcgcgaacgtgagctggaacgggtgatgaacgatttccaccatcaa
cgttttaacgtactagtgtgtacgaccattatcgaaacggggatcgacatccccaccgct
aacacgatcatcattgaacgcgcggatcatttcggccttgcgcagttgcatcagttacgc
ggccgcgtagggcgctcgcaccaccaggcctacgcctggctgttgacgccgcaccctaag
gcaatgaccaccgatgcgcaaaaacggctggaggcgattgcgtcgctggaggatttaggc
gctggttttgcgctggcgacccacgatctggaaatccgcggcgcgggcgaactgcttggc
gaagagcaaagcggctcaatggaaaccattggcttctcactttacatggaactgctggaa
aacgccgtcgatgctctgaaagcaggccgagaaccgtcactggaagatctcaccagccag
caaacggaggtcgagctgcgaatgccgtcgctactgccagatgactttattccggatgtt
aatacccggctgtcgttctataaacgtattgccagcgcgaagaacgaaaacgaactggaa
gagatcaaagtggaattaatcgatcgcttcggcctgctgcccgatccggcgcgtaatctg
ctggatatcgcccgtctgcgccaacaggcgcaaaaactcggcatccgaaaactggaaggt
aacgagaaaggcggaacgattgagttcgccgagaaaaaccacgttgaccctgcatggctt
atcggactgctgcagaaacagccgcagcatttccgcctggatggcccgacacgcctcaag
tttattcaggatttaagcgaacggaaaacgcgtatagactgggtacgccagtttatgcag
caactggaagaaaacgccatcgcgtaa
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integrated database retrieval system
