Saccharothrix espanaensis: BN6_06130
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Entry
BN6_06130 CDS
T02404
Symbol
alkA1
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BN6_06130 (alkA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sesp03000
]
BN6_06130 (alkA1)
03400 DNA repair and recombination proteins [BR:
sesp03400
]
BN6_06130 (alkA1)
Enzymes [BR:
sesp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
BN6_06130 (alkA1)
Transcription factors [BR:
sesp03000
]
Prokaryotic type
Helix-turn-helix
AraC family
BN6_06130 (alkA1)
DNA repair and recombination proteins [BR:
sesp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BN6_06130 (alkA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
DUF6233
HAP
Motif
Other DBs
NCBI-ProteinID:
CCH27942
UniProt:
K0JRG5
LinkDB
All DBs
Position
626804..628339
Genome browser
AA seq
511 aa
AA seq
DB search
MRPDRAAPSMSDFCRPPARRSPMLDHVHEDPERCVRAVQSKDARFDGWFFTAVLTTRIYC
RPSCPVAPPKVENMRFYPSAAAAQQAGFRACKRCRPDASPGSPLWNHRADSVAQAMRLIA
DGVVDREGVPGLAARLGYSVRQVERQLLAELGAGPLALARAQRAQTARLLIETTALPMAE
VALAAGFASIRAFNETVRSVFALSPTDLRTRRRAVADTPGVLSLRLPFRAPLCPDNLFGH
LAATAVPGVEEWRDGAYRRTLRLPHGHAVVALSPQPDHVACRLALTDLRDLSIAIARCRR
MLDLDADPVAVDDRLRTDPDLRPLVDKDPGRRVPGTVDAAEFAVRAVLGQQVSTAAARTH
AGRIVAAAGTPIADVGLTHLFPTPDDLLSLDPAVLAMPNARKVAFRALVEALASGAVDLG
VGADWAKARAELLALPGFGPWTVEVIAMRALGDPDAFIPGDLGVRVAARALGMPDTPGAL
VARAQAWRPWRAYAVQYLWATGDHAVNRLPA
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
gtgcgacctgaccgggccgctccctcgatgtcggatttctgccggccaccggcccggcgt
tccccgatgctggaccacgtgcacgaagacccggaacggtgtgtgcgagccgtgcagtcc
aaggacgcgcggttcgacgggtggttcttcaccgcggtgctgaccactcgcatctattgc
cgtccgagttgtccggtagcgccgcccaaggtcgagaacatgcggttctacccgagtgcg
gccgcggcccaacaagcgggattccgggcgtgcaaacggtgccggcccgacgccagtccg
ggttccccgttgtggaaccaccgcgccgactcggtggcccaggccatgcggttgatcgcg
gacggagtggtggaccgggaaggtgttccgggactcgccgcccggctcggctacagcgtc
cgccaggtcgagcgccaactgctcgccgaactcggcgcgggtccgctcgcgctggcccgc
gcgcagcgggcgcagaccgcgcggctgctgatcgagacgaccgcgctgccgatggccgag
gtggcgctcgcggccggcttcgccagcatccgggcgttcaacgagaccgtgcgctcggtg
ttcgccctctcgcccacggacctgcgcacccggcggcgggccgtcgcggacacgcccggc
gtgctgtcgctgcggctgccgttccgcgcgccgctgtgcccggacaacctgttcgggcac
ctcgcggcgaccgccgtgccgggcgtggaggagtggcgggacggggcgtaccggcggacg
ttgcggctgccgcacgggcacgccgtggtggcgttgtcgccgcagcccgaccacgtggcg
tgccggttggcgttgaccgacctgcgcgacctgtcgatcgccatcgcccggtgccggcgg
atgctcgacctcgacgccgacccggtcgccgtggacgaccggctgcgcaccgacccggac
ctgcgccccctggtggacaaggacccgggccgacgggtgccgggcaccgtggacgcggcg
gagttcgccgtgcgggcggtgctgggccagcaggtgtccacggcggcggcgcgcacgcac
gccgggcggatcgtcgcggcggcgggcacgccgatcgccgacgtcggcctgacccacctg
tttcccacccccgacgatctgctctcgctcgacccggcggtgctggccatgccgaacgcg
cgcaaggtcgcgttccgggcgctggtggaggccctggcctcgggcgcggtcgacctcggg
gtcggcgcggactgggccaaggcgcgcgccgagctcctggcgttgccggggttcgggccg
tggaccgtcgaggtgatcgcgatgcgcgcgctgggtgacccggacgcgttcatcccgggc
gacttgggcgtgcgagtggcggcgcgggcgttggggatgccggacacaccgggtgctttg
gtcgcccgtgcacaggcgtggcgcccttggcgcgcctacgccgtccaatacctgtgggcg
accggtgaccacgcggtcaaccggttgccggcgtga
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