Saccharothrix espanaensis: BN6_07220
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Entry
BN6_07220 CDS
T02404
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN6_07220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sesp03400
]
BN6_07220 (mfd)
Enzymes [BR:
sesp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN6_07220 (mfd)
DNA repair and recombination proteins [BR:
sesp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN6_07220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
UB2H
RecG_dom3_C
IstB_IS21
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
CCH28050
UniProt:
K0JNZ6
LinkDB
All DBs
Position
729557..733120
Genome browser
AA seq
1187 aa
AA seq
DB search
MPQPGPLSGLLTAVLPDKALSALLDSVGSPSLELEGAPAARPLVAAALTRKAPVLAVTAT
GREADDLTNVLRDLLGADAVAIFPSWETLPHERLSPRADTVGARLQVLRRLRHPDGNPLQ
VVVATIRSVIQPMAPGLGDLQPVELVVGGELDFEELLRDLVEIAYTRVDMVEKRGEFAVR
GGILDVFPPTAEHPLRVEFWGDEVSEIRPFSVADQRSLPQVVERFTAPPCRELLLTERVR
ERAAALAAEHQNDAQLVEMLDKLAGGVPSEGMEALIPALCEGELQLLTDVVPEGTHVVLN
DPEKIRARAHDLVRTGQEFLEASWTAAAGGGKAPIDLGASAYRSLAEVADSAKAKGRPWW
TFSQLTTEGADVVRLEFKHVEAYQGDIDRAFADLRAHTAAGGTAVLVVPGAGTAHRAVEQ
LKEADVSAVCVDVLDKAPAVGTVTVVRGSLEDGFSLPDLALVVLTETDLTGGRHGTSTKD
MRRMPSKRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTVAGATREYLVLEYASSKRGQ
PGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKQIAAELVQLYAARQ
AAPGHSFAADTPWQRELEDAFPFTETVDQMAAIDDVKADMERTVPMDRVICGDVGYGKTE
IAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFAERMRAFPVNIKGLSRFTDAQESEQTI
AGLADGEVDIVIGTHRLLQKGLRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSA
TPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGGYDDKQVGAAIRRELLRDGQVFYVH
NRVSSIEKAARRIRDLVPEARVITAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVETGLD
ISNANTLIVERGDMLGLSQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQS
TELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRRHSGAETEG
DEELADVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAAGDEAALQAVWDELKDRYGTPPL
PVERLLAVARFRQTCRAHGVTEVIVQGQTIRFAPLELRDSQLVRLRRLYPKAVHKPAANT
VSVPRPTEGAAGGRMGAPQLRDQELLEWCAHFLRSLAGTPVSGVTGT
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcccggcccgttgtccggcctgctgaccgctgttctgccagacaaggcgctc
agcgccctcctcgactccgtcggctcgccctccctcgaactggagggcgcgccggccgcc
cggccgctcgtcgccgccgccctgacgcgcaaggcgccggtgctggccgtcacggccacc
ggccgcgaggccgacgacctcacgaacgtgctgcgggacctgctgggggccgacgcggtc
gccatcttccccagttgggagaccctgccgcacgagcggttgtcgccccgggcggacacg
gtgggggcccggctccaggtcctgcggcggctccggcaccccgacgggaatccgctccag
gtcgtcgtggccaccattcgcagcgtcatccagccgatggcgcccgggttgggggacttg
cagcccgtcgaactcgtggtcggcggtgaactcgatttcgaggagttgctccgcgacctg
gtcgaaatcgcctacacgcgggtcgacatggtcgagaagcgcggggagttcgcggttcgc
ggcggcatcctcgacgtcttcccgcccaccgccgagcacccgttgcgggtcgagttctgg
ggggacgaggtctccgagatccggcccttctcggtcgccgaccagcggtcgttgccgcag
gtcgtggagcggttcacggctccgccgtgccgggagctgctgctcaccgaacgggtccgg
gagcgggcggcggcactcgccgccgagcaccagaacgacgcgcagctggtcgagatgctc
gacaagctcgccggcggggtcccgtccgaggggatggaggccctgatcccggcgttgtgc
gagggcgagctccagctcctcaccgacgtggtgccggagggcacgcacgtcgtgctcaac
gacccggagaagatccgggcccgtgcgcacgacctggtccgcaccgggcaggagttcctg
gaagcctcgtggacggccgccgccggcggcgggaaggccccgatcgacctgggggcctcg
gcctaccggagcctggccgaggtggccgactcggccaaggccaagggccggccgtggtgg
acgttcagccagctcaccaccgagggcgccgacgtcgtccggctggagttcaagcacgtc
gaggcctaccagggcgacatcgaccgggcgttcgccgacctgcgggcgcacaccgccgcc
ggcgggacggccgtgctcgtcgtgccgggcgccggcacggctcaccgggccgtcgagcag
ctcaaggaagccgacgtgtcggccgtgtgcgtggacgtgctcgacaaggcacccgccgtc
ggcaccgtcacggtggtgcgcgggtcgttggaggacgggttctcgctgcccgacctcgcg
ctggtcgtgctcaccgagaccgacctgaccggcgggcggcacggcacgtccacgaaggac
atgcggcggatgccgtcgaagcggcgcaacgccgtggacccgttggcgctcaaggccggc
gacttcgtcgtgcacgagcagcacggcatcggcaagtacgtggagatggtgcagcgcacg
gtcgccggggcgacccgggagtacctggtgctggagtacgcgtcgtccaagcgcggccag
cccggcgaccggctgttcgtgcccaccgaccagctcgacgaggtgtcgcggtacgtcggt
ggcgagctgcccacgctgaacaagctcggcggcagcgactggaagaacacgaaggccaag
gcgcgcaaggcggtcaagcagatcgcggccgagctggtgcagctctacgccgcccggcag
gccgcgccggggcactcgttcgcggcggacacgccgtggcagcgggagctggaggacgcg
ttcccgttcaccgagaccgtggaccagatggcggccatcgacgacgtcaaggccgacatg
gagcggaccgtcccgatggaccgggtcatctgcggcgacgtcggctacggcaagaccgag
atcgcggtccgggcggcgttcaaggccgtgcaggacggcaagcaggtcgtggtgctggtg
cccacgaccctgctcgcgcagcagcacctcaacacgttcgccgagcggatgcgcgcgttc
ccggtcaacatcaagggcttgtcgcggttcaccgacgcgcaggagtccgagcagacgatc
gcgggcctcgccgacggtgaggtggacatcgtcatcggcacccaccggctgttgcagaag
ggcttgcgctacaaggacctcggcctggtcatcgtggacgaggagcagcggttcggcgtc
gagcacaaggagcacatcaaggcgctgcgcacgcacgtcgacgtgctcaccatgtccgcc
acgccgatcccgcgcacgctggagatgtcgctcgcgggcatccgcgagatgtcgacgatc
ctcaccccgcccgaggagcgccacccgatcctgacctacgtcggcggctacgacgacaag
caggtcggcgcggcgatccgccgtgagctgctgcgcgacggccaggtcttctacgtgcac
aaccgggtgtcctcgatcgagaaggccgcgcggcggatccgggacctggtgcccgaggcc
cgggtcatcaccgcgcacggccagatgaacgaggacaagctggagaagatcatccagggc
ttctgggagaacgagtacgacgtgctggtctgcacgacgatcgtggagaccggcctggac
atctccaacgccaacacgctcatcgtggagcgcggcgacatgctcggcctgtcccagctg
caccagctgcgcgggcgcgtcggccgcggccgggaacgcgggtacgcctacttcctctac
ccgccggaggccccgctcaccgagaccgcgcacgaccggctcgccacgatcgcgcagagc
accgagctgggcgcgggcatggcggtcgcgatgaaggacctggagatccgcggcgcgggc
aacatcctcggcgcggagcagtccgggcacatcgcgggggtcgggttcgacctctacgtc
cggctggtcggcgaggccgtcgaggcgttccggcggcactcgggcgccgagaccgagggc
gacgaggagctggccgacgtccgggtcgacctcccggtcgacgcgcacatcccgcacgac
tacgtgccgggcgagcggctgcggctggaggcctaccgcaagatcgcggcggccggtgac
gaggccgcgctgcaagcggtgtgggacgagctcaaggaccgctacggcaccccgccgctg
ccggtggagcggctgctcgcggtcgcccggttccgccagacgtgccgcgcgcacggcgtg
accgaggtgatcgtgcaggggcagaccatccggttcgcgccgctggagctgcgcgactcg
cagttggtccggctgcgccggctgtacccgaaggcggtgcacaagccggccgcgaacacg
gtcagcgtgcctaggccgacggagggagccgccggcggccggatgggcgcaccgcagctg
cgggaccaggaactgctcgagtggtgcgcgcacttcctgcgatctttggcgggtactccc
gtgagcggcgtcacggggacgtga
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