Saccharothrix espanaensis: BN6_14300
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Entry
BN6_14300 CDS
T02404
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN6_14300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sesp03019
]
BN6_14300
03400 DNA repair and recombination proteins [BR:
sesp03400
]
BN6_14300
Enzymes [BR:
sesp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN6_14300
Messenger RNA biogenesis [BR:
sesp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN6_14300
DNA repair and recombination proteins [BR:
sesp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN6_14300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
CCH28753
UniProt:
K0JX15
LinkDB
All DBs
Position
complement(1492007..1494772)
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AA seq
921 aa
AA seq
DB search
MGDRGAVVARQQLHAVGGQARGLQRVAQDRDQRGVRVLGGGRAAQQGGVAGLQRQAGGVD
GDVRAGLVDHADHAHRDAHLPQLQAVRQDRAAQHLAHRVGEAGHGLQALGHAVDPLLGER
EPVHQALGQTRRAAGLDVLGVRLQDLLGPRAQRGGHLVQRGVLALAGGQDELVGGDSGAP
GGGVHLFAQVVSHENRLRSPGRGCRRGSQCPGGRRRFRVVVPLCHGGPVDEMALREQAEE
RLRALAGPQAALREDQWTAIRALVSERRRALVVQRTGWGKSAVYFIATALLRSLGEGPTV
IVSPLLALMRNQVDAAARAGVHAATINSANTDQWQDVQDRVTSGEIDVLLVSPERLNNPD
FRDSVLPSLTSSAGLLVVDEAHCISDWGHDFRPDYRRLRTLLTELPAGVPVLATTATAND
RVVRDVADQLGLGAGSDTLVLRGPLDRASLRLAAVRLPTAEARLGWLAEQLDRLPGSGII
YTLTVASADDVAAFLRERGYPVAAYSGRTDPAERQRAEEDLLANRVKALVATSALGMGFD
KPDLGFVVHLGAPPSPIAYYQQIGRAGRGVERAEVLLLPGPEDRDIWAYFASLAFPPEQV
VRQVLDALADAGRTLSTAALEPMVELSRTRLEVVLKVLDVDGAVRRVRGGWESTGRAWSY
DEERYGRIAEARKVEQQAVLDYLATTGCRMEFLLRQLDDPHAAPCGRCDNCTGSGWSAEV
SPDAASAARERLLRPGVEVEPRKQWPTGMAAVGVDLSGRIPAGEAAGTGRALGRLTDIGW
GNRLRSLFAGDDQEVPEDVFAACVKVLAAWGWDQRPVGVVTVGSRSRPRLVGSFGHQLST
VGRLPLLGEVWLGEAVRRANSAQRLAGLVQSADVPDLSTVDGPVLLVDDRIDTGWTMTVA
ARLLRRAGAPAVLPFALAVTA
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
gtgggtgaccgaggcgcggtcgtggcacggcagcagctgcacgctgtcggcgggcaggcc
cgcggtctccagcgcgtcgcgcaggatcgcgaccagcgcggtgttcgagtgctcggcgga
ggacgagccgcgcagcagggcggcgttgccggacttcagcgccaggccggcggcgtcgac
ggtgacgttcgggcgggcctcgtagaccatgccgaccacgcccatcgggacgcgcacctg
ccgcagctccaggccgttcggcaggatcgagccgcgcagcacctcgcccaccgggtcggt
gaggccggccacggtctccaggcccttggccacgccgtcgatccgctgctcggtgagcgc
gagccggtccaccaggccctcggacagacccgccgcgcggccggcctcgatgtccttggc
gttcgcctccaggacctcctgggcccgcgtgcgcagcgcggcggccatctcgtgcagcgc
ggcgtccttgcgctcgcgggtggccaggacgagctcgtcggcggcgactcgggcgcgccg
ggcggcggcgtgcacctgttcgcgcaggtcgtcagtcacgaaaacagactacggtcaccc
ggtcgtggatgtcgccgaggttcccagtgcccgggaggccggcggcgattccgcgttgtc
gtgcccctctgccatggtggtccggtggacgagatggcattgcgcgaacaggccgaagaa
cggctgagggctttggccggccctcaggcggcgctgcgcgaggaccagtggacagcaatc
cgcgctttggtctccgagcggcggcgggcgctggtggtgcagcggaccgggtggggcaag
tccgccgtctacttcatcgcgacggcgttgctcaggtcgctcggcgaggggccgacggtg
atcgtgtcgccgctgctcgcgctgatgcgcaaccaggtcgacgcggcggcgcgcgcgggt
gtgcacgcggcgaccatcaattcggccaacaccgaccagtggcaggacgtccaggaccgg
gtgacgtccggcgaaatcgacgttcttctggtgtcaccggaaaggctgaacaatcccgat
ttccgtgactcggtgctgccttcgctgacatcatcggcagggctgctggtggtggacgag
gcgcattgcatctcggactggggtcacgatttccgacccgactaccggcgcttgcggacg
ttgctcaccgaactcccggccggggtgccggtgctggcgacgaccgcgacggccaacgac
cgggtggtgcgggacgtggccgaccagctcgggttgggggccggttcggacacgctggtg
ctgcgcgggccgctggaccgggcgagcctgcggctggcggcggtgcgactgccaaccgcc
gaggcgcggctggggtggctggccgagcagctcgaccggctgccgggttcggggatcatc
tacacgctgaccgtcgcgtccgccgacgacgtggccgcgttcctccgggagcgcgggtac
ccggtggcggcgtactcgggccgcaccgacccggcggagcggcagcgggcggaagaggac
ctgctggcgaaccgcgtcaaagcgctggttgcgacatcggcgctgggcatggggttcgac
aagccggacctggggttcgtggtgcacctgggcgcaccgccctcccccatcgcctactac
cagcagatcgggcgtgcgggccgcggcgtggaacgggccgaggtgctgctgctgccgggt
ccggaggaccgggacatctgggcgtacttcgcctcgctggccttccccccggagcaggtc
gtgcggcaggtgctcgacgcgctggccgacgcggggcggacgttgtcgaccgccgcgctg
gagccgatggtcgagctgtcgcgcacccggctggaagtggtgttgaaggtcctcgacgtg
gacggcgctgtgcgccgggtgcgcgggggctgggagtcgaccgggcgggcgtggtcctac
gacgaggagcggtacgggcggatcgcggaggcgcggaaggtcgagcagcaggcggtgctc
gactacctcgccaccacggggtgccggatggagttcctgctgcgccagttggacgacccg
cacgccgcgccgtgcggccggtgtgacaactgcaccgggagcgggtggtcggcggaggtc
tcgccggatgccgcgtcggcggcgcgggagcggttgctgcgccccggcgtggaggtcgaa
ccgcgcaagcagtggccgaccgggatggcggcggtcggcgtcgacctgtccgggcgcatc
ccggcgggcgaggcggccgggacggggcgggcgttggggcggttgaccgacatcgggtgg
ggcaaccggttgcggtcgctgttcgccggcgacgaccaggaggtgccggaggacgtcttc
gccgcctgcgtgaaggtgctggcggcgtggggctgggaccagcgcccggtgggcgtcgtg
acggtcgggtcgcggagccggccgcggttggtgggcagcttcggccaccagctgtccacg
gtcgggcggctgccgctgctcggcgaggtctggttgggcgaggcggtgcggcgggcgaac
agcgcgcagcggctggccggcctggtgcagtccgccgacgtgcccgacctgtccactgtg
gatggaccggtgttgttggtggacgaccggatcgacaccggctggacgatgacggtcgcg
gcgcggctgctgcgccgggcgggggcacctgctgtactgccgttcgcactggcggtcacg
gcgtga
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