Saccharothrix espanaensis: BN6_17540
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Entry
BN6_17540 CDS
T02404
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sesp
Saccharothrix espanaensis
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sesp03016
]
BN6_17540 (rtcB)
Enzymes [BR:
sesp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BN6_17540 (rtcB)
Transfer RNA biogenesis [BR:
sesp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BN6_17540 (rtcB)
Prokaryotic type
tRNA splicing ligases
BN6_17540 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CCH29075
UniProt:
K0JPR1
LinkDB
All DBs
Position
complement(1811812..1812966)
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AA seq
384 aa
AA seq
DB search
MTATTLSGARVDIRLWADPAEVEEQALRQLRNIASLPWAVKHVAVMPDVHYGLGATVGSV
IALKDAVSPAAVGVDIGCGMTAVRTSLSANDLPASLGPLRSALEAAVPVGFAMHREPVVG
RDGFWDAFDRLTPALDLDRAVRQVGTLGGGNHFLEVCLDTDDRVWVMLHSGSRGVGNQLA
QHHIAVARTLAHNEVLPDPDLAVFLAGTPEMAAYRHDLYWAQEYARRNRATMLGLVCDVL
RRSFPAVSFDEPISAHHNYVSEEHHFGEDVLVTRKGAIRARKGELGIIPGSMGTGSYIVR
GLGNPDSFESASHGAGRRMSRTKARKTFTEADLAAQTAGVECRKDAGVVDEIPGAYKDLD
AVIARQSDLVEVVTRLKQVVCVKG
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaccaccctctccggcgcacgcgtcgacatccggctctgggccgacccggcc
gaggtcgaggagcaggcgctgcgccagttgcgcaacatcgcctcgctgccgtgggcggtc
aagcacgtggccgtcatgccggacgtgcactacgggctcggcgccacggtcggctcggtc
atcgcgctcaaggacgcggtgtccccggcggccgtcggcgtcgacatcgggtgcggcatg
acggcggtgaggacatcgttgtcggcgaacgatctgccggccagcctcgggccgctgcgc
tcggcgttggaggccgcggtgccggtcgggttcgcgatgcaccgggagccggtggtcggg
cgggacggtttctgggacgcgttcgaccggctgaccccggccctcgacctggaccgcgcg
gtgcgccaggtcggcacgctgggcggcggcaaccacttcctcgaggtctgcctggacacc
gacgaccgggtgtgggtgatgctgcactccgggtcccggggcgtcggcaaccagctggca
cagcaccacatcgcggtcgcgcggacgttggcgcacaacgaggtgctgcccgacccggac
ctggcggtgttcctcgccggcacgccggagatggccgcctaccggcacgacctgtactgg
gcgcaggagtacgcgcggcgcaaccgggcgaccatgctcgggctggtgtgcgacgtgctg
cggcgctcgttcccggcggtgtcgttcgacgagccgatcagcgcgcaccacaactacgtg
tccgaggagcaccacttcggcgaggacgtcctggtgacccgcaagggcgcgatccgggcc
cgcaagggcgagctggggatcatcccgggttccatgggcaccggttcgtacatcgtgcgc
gggctgggcaacccggactcgttcgagtccgcgtcgcacggcgcggggcgccggatgtcg
cggaccaaggcgcgcaagacgttcaccgaggccgacctggcggcgcagacggcgggtgtc
gagtgccgcaaggacgcgggcgtggtggacgagatcccgggcgcctacaaggatctcgac
gcggtcatcgcgcggcagagcgacctcgtggaggtcgtcacccggctcaagcaggtggtg
tgcgtcaagggctag
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