Saccharothrix espanaensis: BN6_39390
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Entry
BN6_39390 CDS
T02404
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN6_39390 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sesp03021
]
BN6_39390 (rho)
03019 Messenger RNA biogenesis [BR:
sesp03019
]
BN6_39390 (rho)
Transcription machinery [BR:
sesp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BN6_39390 (rho)
Messenger RNA biogenesis [BR:
sesp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BN6_39390 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
S1CSD-TOTE-2
NACHT
Spore_III_AA
TAD2
Motif
Other DBs
NCBI-ProteinID:
CCH31227
UniProt:
K0K105
LinkDB
All DBs
Position
complement(4303673..4304815)
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AA seq
380 aa
AA seq
DB search
MTATLQRGDKTTTTTHTPVTGVLDVVGANAFIRTSGYLPGPNDVFVPPSTATRFGLRRGD
LVAGSTGPGTGRHQRPQLVQVDRVNGQEAGKARHRPEFADLVPVHPTERLRLETRPDELT
TRVVDLLMPVGKGQRALIVAPPKAGKTSVLCSIAQGISRNNPECHLIVVLVGERPEEVTD
LRRTVPGEVVASTFDRSPADHIALAELAVERAKRLVEQGRDVVVLLDSLTRLGRAYNLAA
PASGRTLSGGIDSSALLPPKRFLGAARNIEGGGSLTIFATALVETGSTGDTLIFEEYKAT
GNAELKLDRKVAAKRVFPAVDVEQSGTRRDDLLLSPEELAVTQTLRRALDGRDVDMLLEG
LRKTRTNYEFLSQLSRPAAA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgactgccactctgcaacgcggggacaagaccaccaccacgacgcacaccccggtgacc
ggggtcctcgacgtcgtcggcgccaacgccttcatccgcacgtcgggctacctgcccggc
ccgaacgacgtcttcgtccccccgtccaccgcgacccggttcggcctgcgccgcggcgac
ctggtggccggctccaccgggcccggcaccggccgccaccagcggccgcagctggtccag
gtcgaccgggtcaacgggcaggaggccgggaaggcccggcaccgccccgagttcgccgac
ctggtgccggtgcaccccaccgagcggctgcgactggagacccggcccgacgagctgacc
acccgggtcgtggacctgctcatgccggtcggcaaggggcagcgggcgctgatcgtcgcg
ccgcccaaggcgggcaagacctccgtgctgtgctcgatcgcccagggcatcagccgcaac
aaccccgagtgccacctgatcgtcgtgctcgtcggcgagcgccccgaggaggtcaccgac
ctgcgccgcaccgtgcccggcgaggtggtcgcctcgacgttcgaccgctcccccgcggac
cacatcgcgctggccgaactggccgtggagcgggcgaagcggctggtcgagcagggccgt
gacgtcgtcgtgctgctcgactcgctgacccggctgggccgggcctacaacctggccgcg
cccgcctccggccggaccctgtccggcggcatcgactccagcgccctgctgccgcccaag
cggttcctcggcgcggcccgcaacatcgagggcggcgggtcgctgaccatcttcgccacc
gccctggtggagaccggttccaccggtgacacgctgatcttcgaggagtacaaggccacc
ggcaacgccgagctcaagctggaccgcaaggtcgccgccaagcgggtgttccccgccgtg
gacgtcgagcagtccggcacccggcgcgacgacctgctgctctcgcccgaggagctcgcc
gtcacgcagacgttgcggcgggcgctcgacggccgtgacgtcgacatgctgctggagggc
ctgcgcaagacccgcacgaactacgagttcctcagccagttgtcgcgccccgcggcggcg
tga
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