Saccharothrix espanaensis: BN6_55390
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Entry
BN6_55390 CDS
T02404
Name
(GenBank) putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sesp
Saccharothrix espanaensis
Pathway
sesp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sesp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN6_55390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sesp03019
]
BN6_55390
Messenger RNA biogenesis [BR:
sesp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN6_55390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CCH32798
UniProt:
K0K803
LinkDB
All DBs
Position
6197418..6199094
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AA seq
558 aa
AA seq
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MAQTSVPPPTLAPDALRVIALGGLGEIGRNMTVFEHEGKLLVVDCGVLFPEEHQPGVDVI
LPDWTHFRDRLSDVVAVVLTHGHEDHIGGVPYLLRERPDIPIVGSRLTLALLTAKLVEHR
ITPVTVEVQEGRRLSRGPFDLEFLAVNHSIPDSLAVAIRTAAGLVLHTGDFKMDQFPLDG
RMTDLRGFARLGEEGVDLFLVDSTNADVPGFTTAERDLAPAIDEVFRTTPRRVIVSSFAS
HVHRIQQVLDAAHAHGRKVAFVGRSMVRNMGVATELGYLKVPDGLVVDIKRMDRMPPRQV
TLICTGSQGEPMAALSRMAGGDHSIQVEEGDTVLLASSLIPGNENAIYRVINGLTDRGAN
VVHKGNAKVHVSGHASAGELVYCYNIVQPANVLPVHGEARHLRANAELAVKTGVHRERVP
IAANGHVVDLQDGRARITGRVEIHNVYVDGQTVGGVTEASLAQRRTLGEEGVITVVAIVD
TDSRRLAEPPDFIAHGFEHDTSTFVPTTAAIEKALAGAAERSVTDFEELERLIAREVQNW
AFRTHRRRPVVIPVVVEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaacctccgtccctccgccgaccctcgcccccgacgcgctgcgcgtcatcgcc
ctgggcgggctcggcgagatcgggcggaacatgaccgtgttcgagcacgagggcaagctg
ctcgtcgtggactgcggcgtgctgttcccggaggagcaccagcccggagtggacgtgatc
ctcccggactggacccacttccgggaccggctgtccgatgtggtcgcggtcgtgctcacc
cacggccacgaggaccacattggcggggtcccctacctgctgcgcgaacgccccgacatc
cccatcgtcggctcacgcctgaccctggccctgttgacggccaagctcgtcgaacaccgc
atcaccccggtgacggtggaggtccaggaaggacgccggctctcgcgaggaccgttcgac
ctggagttcctggcggtcaaccactccatccccgacagtctggccgtagcgatccgcacc
gctgccggactcgtgctgcacaccggcgacttcaagatggaccagttcccgctcgacgga
cgcatgaccgacctgcgcggcttcgcccgcctcggagaggaaggcgtcgacctgttcctg
gtcgactccaccaacgccgacgtgcccggcttcaccaccgccgagcgcgacctcgccccg
gcgatcgacgaggtgttccgcaccaccccgcgccgcgtcatcgtgtccagcttcgccagc
cacgtgcaccgcatccagcaggtcctcgacgccgcccacgcccacggccgcaaggtcgcc
ttcgtggggcgttccatggtccgcaacatgggcgtggccaccgaactcggctacctcaag
gtccctgacggcctcgtggtggacatcaagcgcatggaccggatgccgccccgccaggtg
acgctgatctgcaccggctcgcaaggcgaaccgatggccgcgctgtcgcgcatggccggc
ggcgaccactcgatccaggtcgaggagggcgacaccgtcctgctggccagctcgctcatc
cccggcaacgagaacgccatctaccgggtcatcaacggcctcaccgaccgcggcgcgaac
gtcgtgcacaagggcaacgccaaggtccacgtctccggccacgccagcgccggcgaactc
gtctactgctacaacatcgtccaaccggccaacgtcctgcccgtgcacggcgaagcccga
cacctgcgcgccaacgccgaactcgccgtcaagaccggcgtgcaccgcgaacgcgtgccg
atcgccgccaacggccacgtcgtcgacctccaggacggccgggcacgcatcaccggcagg
gtcgagatccacaacgtctacgtcgacggtcagaccgtcggcggcgtcaccgaagcctcg
ctggcccagcgccgcaccctgggcgaggaaggcgtcatcaccgtcgtcgcgatcgtcgac
accgactcccgccgcctcgccgaaccgccggacttcatcgcccacggcttcgagcacgac
acctcgaccttcgtccccacgacagccgccatcgagaaggccctcgccggcgccgccgag
cgcagcgtcaccgacttcgaggaactcgaacggctcatcgcgcgcgaggtgcagaactgg
gccttccgcacccaccgccgccgtcccgtcgtcatccccgtcgtcgtcgaggcgtga
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