Salmonella enterica subsp. enterica serovar Enteritidis P125109: SEN3345
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Entry
SEN3345 CDS
T00776
Symbol
rtcB
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
set
Salmonella enterica subsp. enterica serovar Enteritidis P125109
Brite
KEGG Orthology (KO) [BR:
set00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
set03016
]
SEN3345 (rtcB)
Enzymes [BR:
set01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SEN3345 (rtcB)
Transfer RNA biogenesis [BR:
set03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SEN3345 (rtcB)
Prokaryotic type
tRNA splicing ligases
SEN3345 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CAR34920
UniProt:
A0A6C7HUN0
LinkDB
All DBs
Position
complement(3562133..3563350)
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AA seq
405 aa
AA seq
DB search
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGS
VIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGRTTGRGRRD
VGAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNSYKHLGTLGTGNHFIEICLDETDR
VWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKSIVLDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS
ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAH
VECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYTLRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattacgaattgatgaccacccagaacgcaccggtaaaaatgtggaccaaaggc
gtaccggtagaagacgatgcccgtcagcaactgattaatacggcgaaaatgccgtttatt
ttcaaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagc
gtgatcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtgga
atgaacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggagctg
cgtagcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcgtcgcgat
gtgggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcagctggaagcg
ggatatcagtggttaacgcaaaaatatccgcgctttttgaataccaatagctataagcac
ctgggaacattgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgg
gtatggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctatttt
atcggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctg
gcgtattttaatgaaggaagcgaatattttgatgattacctgaaagcggtacactgggcg
cagcaattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccag
cgctgcgtggaaaaatcgatcgtcctcgatatggacgagatcaactgccaccataactat
gtgcaaaaagaacagcactttggcgaagagatttatgtgacgcgtaaaggagcggtttcg
gcgcggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtg
cgcgggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccgggcgtgtgatg
agccgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcat
gtcgaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagacatt
gatgcggtgatggcggcgcagtctgacctggtggaaatcatgtacaccctgcggcaggtg
gtgtgcgttaaaggatag
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