Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921: CFSAN001921_00950
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Entry
CFSAN001921_00950 CDS
T02737
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
setc
Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921
Pathway
setc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
setc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFSAN001921_00950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setc03021
]
CFSAN001921_00950
Transcription machinery [BR:
setc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFSAN001921_00950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMPIT
YicC-like_N
Motif
Other DBs
NCBI-ProteinID:
AGQ66604
LinkDB
All DBs
Position
complement(189195..191177)
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AA seq
660 aa
AA seq
DB search
MPHIDREAPDSRSERQRPKYKYALALNVDSYTVDTNQTNKCGYRLMEQNPQSQLKLLVTR
GKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLAENTTSTD
EDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCS
VAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTATHVGSELSQEDLDDD
EDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLS
EVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSE
TWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTIEQVKDINRRMSIGEAKAR
RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDK
IRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTA
REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatatcgatcgggaagcccccgacagccgcagtgagaggcagcggccaaaatat
aagtatgccctcgctttaaatgtcgacagctataccgtcgacaccaatcaaacgaataag
tgtggataccgtcttatggagcaaaacccgcagtcacagctgaaacttcttgtcacccgt
ggtaaggagcaaggctatctgacctatgctgaggtcaatgaccatctgccggaagatatc
gtcgattcagatcaaattgaagatatcatccaaatgatcaacgacatgggtattcaggta
atggaagaagcgcctgatgccgatgatctgctgctggctgaaaataccaccagcaccgat
gaagatgcggaagaagctgctgcacaagttctgtccagtgttgagtctgaaatcggtcgt
acgactgacccggtacgcatgtatatgcgtgaaatgggcactgttgaactgttgacccgg
gaaggcgaaatcgacatcgctaaacgtatcgaagacgggatcaaccaggttcaatgctcc
gttgccgaatacccggaagccattacctatctgctggaacagtacgatcgcgttgaggct
gaagaggctcgtttgtccgatcttatcaccggctttgtcgatccgaacgcggaagaagag
atggcgccgaccgcaactcacgtcggttctgaactctcccaggaagacctggatgatgac
gaagacgaagatgaagaagacggcgacgatgacgccgccgatgacgacaacagcattgac
cctgaactggcacgcgaaaaattcgctgagctgcgcgcgcaatacgtcgttacgcgcgac
accatcaaagcgaaaggccgcagccatgctgccgcgcaggaagagattctgaagctgtct
gaagtgttcaaacagttccgtctggtaccgaagcaattcgactatctggtcaacagtatg
cgcgtgatgatggatcgcgtgcgtacccaggaacgtctgatcatgaagctctgcgtcgag
cagtgcaaaatgccgaagaagaactttatcacgctgtttaccggtaatgaaaccagcgaa
acctggttcaatgccgctatcgcgatgaacaaaccgtggtcggaaaaactgcacgatgtc
gcggaagaagtgcaacgctgcctgcaaaaactgcggcagattgaagaagagaccggtctg
accatcgaacaggtgaaagacatcaaccgtcgcatgtccatcggggaagcgaaagcccgc
cgtgcgaagaaagagatggttgaagcgaacttgcgtctggttatttctatcgctaagaaa
tacaccaaccgtggcttgcaattccttgatctgattcaggaaggcaacatcggtctgatg
aaagcggtagataagttcgaataccgtcgcggctacaaattctccacctatgcaacctgg
tggatccgtcaggcgatcacccgttctatcgccgatcaggcgcgcaccatccgtattccg
gtgcatatgattgagaccatcaacaagctcaaccgtatttctcgccagatgctgcaagag
atgggccgcgagccaacgccggaagagctggctgaacggatgctgatgccggaagataaa
attcgtaaggtgctaaagattgccaaagagccaatctccatggaaacgccgatcggcgac
gatgaagattcgcatctgggtgatttcatcgaggataccaccctcgagctgccgctggac
tctgccactaccgagagcctgcgtgccgccactcacgacgttttggctggcctgaccgct
cgtgaagcgaaagtgctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctg
gaagaagtgggtaaacagttcgatgttacccgcgaacgtatccgtcagatcgaagcgaag
gcgctgcgtaaactgcgccacccgagccgttctgaagtgctgcgcagcttcctcgacgat
taa
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