Suncus etruscus (white-toothed pygmy shrew): 125994824
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Entry
125994824 CDS
T09902
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125994824 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
125994824 (EXOSC1)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125994824 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
125994824 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
125994824
NCBI-ProteinID:
XP_049620308
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Position
17:complement(41233432..41243093)
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AA seq
195 aa
AA seq
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MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLNRSSENGALPVISVLRETE
SQLLPDVGTTVTCKVSSINTRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK
SFHPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSEAGVQMVPISWCEMQCPKTHTK
EFRKVARVQPEFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcccgtgagatactgcattcctggcgagcgtctgtgcaacttggaggaaggc
agtccgggcagcggcacctacacccgccacggctacatcttctcttcgctggccgggtgc
ctgaacaggagcagcgagaacggcgcgcttcctgtcatctctgtgctgagagaaacagaa
tcccagttactgccagatgtggggactacagtaacatgtaaggtctctagcattaacaca
cgctttgccaaagtgcacatcctatatgtggggtccacaccactcaagaattcatttcga
ggaaccattcgcaaggaagatgtccgagctactgaaaaagataaggttgaaatttataag
agttttcacccaggtgacattgtcttggccaaagtgatctccctgggtgatgcacagtct
aattatctcctaaccactgctgaaaatgaactcggggtagtggtggcccacagtgaagca
ggtgtccagatggttcccatcagctggtgtgagatgcagtgtcctaagacacatactaag
gaattccggaaagtggcccgagtgcagccagagttcttgcagacctaa
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