Suncus etruscus (white-toothed pygmy shrew): 125994976
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Entry
125994976 CDS
T09902
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1-like
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125994976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
125994976
Membrane trafficking [BR:
setr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125994976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
SUZ-C
Motif
Other DBs
NCBI-GeneID:
125994976
NCBI-ProteinID:
XP_049620497
LinkDB
All DBs
Position
17:4540903..4545803
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AA seq
858 aa
AA seq
DB search
MSIKAFTLVPAVEQELLMGDKERVSIECVECCGKNLYVGTSDGSIIHFLLEEQPLPAGTV
TFSASRQLRRHLGSRKPVEELRAASALSRLLVLCDSCIRLLHMTSLEPVPSGARIKGAVA
FSLNENPVSGDPFCVEVCIISAKRRTLQLFLVYEDRVQIVREVSTPEQPLAVALDGHFLC
LALTTQYIILNYSTGTSQDLFPYCSEEKRPIVKRIGRQECLLAGPGGLGMFATVAGISQR
APVHWSESVIGAALCFPYVLALDDQFITVHSMLDQQQKQTLPFKEGHSLQDFEGRVIVAT
GKGVYILVPLPLEKQIQDLLANRRVEEALVLAKGARRNIPKEKFQVMYKRILQQAGFIQF
AQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEKM
AKCKRFLMSYLNEIRSTESSNGYKEDVDTALLKLYAEADHDSLLDLLVTENSCLLSDSAA
WLEKHNKYFALGLLYHYNKQDSKAVQLWVNIVNGDVQDATRSDLYEYVIDFLTYTSDQEL
VWKYADWVLQKSQEVGVKVFTGRPLDEGQKNSFNPNDIITCLNKYPKALVKYLEHLVMDQ
RLQREEFHTRLALLYLDQVLQLRLPEGSPDGSPGAEVPEVQKKLRLLLQRSDLYRVHYLL
DRVRGAGLPLERAILHGKLEEHDEALRILVLELQDFAAAEDYCMWRSEGRDPAYRRRLFH
SLLSLYLSSELPVAATDLLNRHAAEFDAAQLLPLLPGAWSVQLLCPFLTGAVRDSVHGGR
SAQVAVGLARSENRLYKYEKMKLKGSSVWLSDKKLCQLCQNPFCEPVFVRYPNGGLVHMH
CAASRHRSPSPPTPGPRT
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcaaggccttcacactggtccctgcggtggaacaggaactgctcatgggcgac
aaggagcgggtcagcatagagtgcgtggagtgctgcggcaagaacctctacgtgggcacc
agtgatggctccatcatccacttcctgctggaggagcagcctctgcccgctggcacggtc
actttctcggcctccaggcaactgcgcaggcacctgggctcgaggaagcccgtggaggag
ctgcgggcggcatcagccctcagccggctgctggtgctatgtgacagctgcatcaggctg
ctgcacatgaccagcctggagcctgtgccctcaggagcccgtatcaagggggccgtggcc
ttctccctcaatgagaaccccgtcagcggggaccccttctgcgtggaggtctgcatcata
tccgccaagcgcaggaccctccagctcttcctggtgtatgaggaccgcgtgcagatcgtc
agggaggtgtccacgcccgagcagcccctggccgtggccctggatggccatttcctgtgc
ctggccctgaccactcagtacatcatcctcaactacagcaccggcacctcccaggacctg
ttcccttactgcagcgaggaaaagcgtcccattgtcaagaggatagggcgacaggagtgc
ctgctggcaggccccggagggttaggcatgtttgccaccgtggccgggatctctcagcgc
gcacctgtgcactggtcagagagcgtgatcggggccgctctctgtttcccgtacgtgctt
gccctcgatgaccagttcatcacggtgcacagcatgctcgaccagcagcagaaacagacc
ctgccctttaaggaaggccacagtctacaggattttgaaggaagagtgattgtcgccaca
ggcaaaggagtttacatcttggttccgttacctctggaaaagcaaatccaggatctcctt
gccaaccggagagtggaggaggcgctggttttagccaaaggagcccggaggaacattcca
aaagagaagtttcaggtgatgtacaagcggatcctgcagcaggcaggattcatacagttt
gcacaacttcagttcctagaagcaaaagagctcttcagaagcggccagctcgacgtccgg
gagctaatctcactctaccccttcctgctgcccacctcatcttcatttacgcggtctcac
ccccctctccacgaatatgcggacctcaaccagctgacccaaggagaccaggagaagatg
gccaaatgtaagagattcctcatgagctacctgaatgaaatacgcagcacagagagctcc
aatggctacaaggaggacgtggacacagcgctgctgaagctgtatgcagaggctgaccac
gacagcctgctggatctgctggtcaccgagaactcctgcctgctgagtgacagcgccgcc
tggctagagaagcacaacaagtatttcgccctggggctgctctatcactataataaacaa
gactccaaggctgtccagctgtgggtgaacatcgtgaacggggatgtgcaagatgccacc
cgctcggacttgtacgagtatgtcattgattttctcacctatacctcggaccaggagctt
gtgtggaagtatgccgactgggtcttacagaagagccaggaggttggagttaaagtgttt
accgggcgacccttggatgaagggcagaagaacagtttcaatcccaacgatatcattact
tgccttaacaaataccccaaagctcttgttaaatatctggaacatctagtcatggaccag
agattgcagagggaagagttccacacgcgcctcgcgctcctctacctagatcaggttctg
cagctccggctcccggagggcagccccgatggtagccctggggcagaggtccccgaagtg
cagaagaagctccgcctcctgctccagagatccgacctctacagagtccactatctgctt
gatcgggtgcgcggggccgggctgccgctggagcgtgccatcctgcacggaaaactggag
gagcacgacgaggctctgcgcatcctggtgctggagctgcaggacttcgcagcggccgag
gactactgcatgtggcgctccgagggccgcgacccagcctaccgccgccgcctcttccac
tccctgctcagcctctacctgagctccgagctgcctgtggctgccaccgacctcctgaac
cgccacgcggccgagttcgacgcggcgcagctgctgccgctgctgccgggagcctggtcg
gtgcagttgctctgcccgttcctcacgggcgctgtcagggacagcgtgcatggcggcagg
agtgcgcaggtcgctgtgggcctcgcccgctccgaaaaccgactctacaagtacgagaag
atgaagctgaaaggaagctcagtgtggctctcagacaaaaagctttgccagctgtgccag
aatcctttttgtgagcccgtgtttgttagatacccaaatggtggcctcgtacatatgcac
tgtgcagccagcagacacaggagccccagtccccccacccctggccctcggacttga
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