Suncus etruscus (white-toothed pygmy shrew): 125995053
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Entry
125995053 CDS
T09902
Symbol
BRIP1
Name
(RefSeq) LOW QUALITY PROTEIN: Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03440
Homologous recombination
setr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125995053 (BRIP1)
03460 Fanconi anemia pathway
125995053 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
setr03400
]
125995053 (BRIP1)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125995053 (BRIP1)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125995053 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
125995053 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
ARCH_RTEL1
Motif
Other DBs
NCBI-GeneID:
125995053
NCBI-ProteinID:
XP_049620586
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All DBs
Position
1:complement(173155288..173301608)
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AA seq
1299 aa
AA seq
DB search
MSSVRSEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSA
LAWQQSLSEKPVDEGSSKKAEVPLSCCCTCHSKKFSNNDVNQGTSHHFNIPSTPPSERID
TSACQDSPKRTSLAAKLSAKKQASAYRDENDDFQVEKKRIRTLETTQEIRKRHSVKKEVH
LSDTKVASGNITNPSSPLGKTNSVPSQNHSVMKSAVTGNLRGECNNSSMAVTSSALTDCL
FGTSVNLLSHPDISSLFFSLLQPSGICSSCHCSTKQGNSQDSSDTIKKDQGGKSKIPKIY
FGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHTCIHPEVVGNFNRNEKCMEFLDGKNG
KSCYLYHGIHKISDQYTLQNLHGMHKAWDIEELVSLGKKLKACPYYTARELTETADIIFC
PYNYLLDAQIRETMDINLKEQVVILDEAHNIEECARESASFTITEVQLRFARDELEVMVN
NNIRKKDHGPLQAVCYSLINWLEANSEHLVERDYESSCKIWSGSEMLLYFHKMGITTATF
PILQGHFSAVLQKEEKIFPIYGKEESREVPIISASTQIMLKGLFMVLDYLFRQNSRFADD
YKVAIQQTYCWTNQYDTSDKNGFFVVPKNKKRSRQKTAVHVLNFWCLNPAVAFSDINGKV
RTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINDSQVWVGTIGTGPKGRNLCATFKHT
ETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKDRWFYTGLWHNLELVKTVIVEP
QGGEKTDFDELLQVYYDAIKYKGGKDGALLIAVCRGKVSEGLDFSDDNARAVITIGIPFP
NVKDLQVELKRQYNDQHSKSRGLLPGRHWYEIQAYRALNQALGRCIRHKNDWGALILVDD
RFRSNPDRYISGLSKWVRQQIHHYSTFDSALHSLAKFSKKHQKIIDVSKEDSESTFEAAC
LKDSTSTCLLEAECHLSLENPKENETKMCVQELHCPTMGSLSPPSGINSREEKNDPDLVE
ESTLAMKAEKIVISRSTSPTFEKGLKRFKWTKFNSSGPYFTGKILSTTSTASGDFTFPSE
IEKGCETVLSVTDKCESSALTENTSFEPCSQPETIPLIKTDASLPKENHSGQQLCSEEVL
NAGIELPLVHEEDSLSTSRGSFDSNAEDESIYFTPELYDPIDTNEEKNELIGTDNDEKSP
NNSNCILVEDLFEXEEEREFREVKAEECTNRRLKSVVHSKDIKMNDIVSNVKATHXLELR
KTYEIEYQKLLKKSSKNRGRSNTFSASMTEKNITYVPND
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagtaagatctgaatatacaattggtggggtgaagattaattttccttgtaaa
gcatatccatcacagcttgctatgatgaattctatcgtcagaggattaaacagtaaacaa
cattgtttgttggagagccccacaggaagtgggaaaagcttagctttactttgttctgct
ttagcatggcaacagtctttaagtgagaagccagttgatgaaggatcaagtaagaaagct
gaagtgccattgtcttgttgttgtacatgccattcaaagaaattttcaaacaatgatgtg
aaccaaggaacttcacatcattttaacatccctagtacgccaccttctgaaagaatcgac
acatcagcttgtcaagactcgcccaaaagaacttcactggctgcaaagttgtctgccaag
aaacaagcttctgcttatagagatgaaaatgatgattttcaagtagagaaaaaaagaatt
cgtaccttggaaaccacacaggagattagaaagcggcactctgttaaaaaggaggtacac
ctctcagatacaaaagttgcttcagggaatatcacaaaccccagttctccattaggaaag
acaaactccgttccttcacagaatcactctgtaatgaaatctgctgttactggcaacctg
agaggggaatgtaacaattccagcatggctgtaacttcatctgctttgaccgactgttta
tttggcacatcagtgaaccttttatcccatcctgacattagttctcttttcttttctttg
ttacagccttctggtatctgttctagctgccattgttctactaaacaaggaaacagtcaa
gattcttcagataccattaaaaaggaccaaggggggaaatccaagatacccaaaatatat
tttgggactcgcacgcacaagcagattgctcagattactagggagctccggaagacagca
tactcaggggtcccaatgactattctttccagcagagatcatacctgtattcaccctgaa
gtagtaggtaactttaacagaaatgaaaagtgtatggaatttctggatggaaaaaatggc
aaatcctgctatctttatcatggaattcataaaattagtgatcagtacacattacagaat
ctccatgggatgcataaggcatgggatatagaagaactcgtcagcttaggaaaaaaatta
aaagcatgcccatattacacagcacgagaactaacagaaactgctgatataattttttgt
ccatacaactatcttcttgatgcacagataagggaaactatggatatcaatctgaaagaa
caggttgtcattttagatgaagcccataacattgaggagtgtgctcgcgagtcagcaagt
ttcactataacagaagttcagcttcggtttgctcgagatgaactggaagtaatggtcaac
aataatataaggaaaaaagaccatggacccttacaagctgtgtgctatagcctcattaat
tggttagaagcaaattctgaacatcttgtagaaagggattatgagtcatcctgtaaaata
tggagtggaagtgaaatgctcttatattttcacaaaatgggcattaccactgctaccttt
cccattttgcagggacatttttctgctgtacttcaaaaagaagaaaaaatctttccaatt
tatggtaaagaagagtcaagagaagttccaattattagtgcttctactcagataatgctc
aaaggactcttcatggtgctcgattatctctttaggcaaaatagcagatttgcagatgat
tataaagttgctattcaacaaacttactgttggacaaaccagtatgatacttcagataaa
aatgggtttttcgttgtaccaaaaaataaaaaacgttcacgacagaaaactgcagttcat
gtgttaaacttctggtgcttaaatccagctgtggccttttcagatattaatggaaaagtt
cggacaattgttttaacatctggcacgttatcaccaatgaaatccttctcttcagaactt
ggtgttacatttactatccaactggaagctaatcatgtcattaatgactcacaggtttgg
gttggcaccattgggacaggccctaagggtcggaatctctgtgctaccttcaaacacacg
gaaacctttgagttccaagatgaagtgggagcacttctgttatctgtttgccagactgtg
agccaaggaattttgtgtttcttgccatcttacaagttattagaaaaattaaaagaccgt
tggttctacactggtttatggcataatctggaattggtgaagacagtcattgttgaacca
caaggaggagagaaaacagattttgatgaattactgcaggtatactatgatgcaatcaag
tataaaggagggaaagatggagccctcttgatagcagtttgtcgtggtaaagtgagcgag
ggtctggatttctcagatgacaatgcccgtgctgtcataacgataggaattcctttccca
aatgtgaaagatttacaggttgagctgaagcgacagtataatgatcagcattcaaaatca
agaggtcttttacctggccgtcactggtatgaaattcaagcgtatagggccttgaaccag
gccctgggtagatgcattcgacacaaaaatgactggggagctcttattctagtggatgac
cgcttcaggagtaacccagatcgctatatatctggactttctaaatgggtaaggcagcag
attcatcactattcaacctttgacagtgcactacattccttggctaaattttccaaaaag
caccaaaagatcattgatgtatccaaagaagacagtgagtctacatttgaagcggcctgt
ttaaaggacagtacctcaacttgtttattagaagcagaatgtcatttgtcattagaaaac
ccaaaggaaaatgaaacaaaaatgtgtgtccaagaactgcattgtcctaccatgggaagt
ctgtcaccaccaagtggcatcaactctagagaggaaaaaaatgatccagacttagtggaa
gagtctaccctagcaatgaaagcagaaaaaattgtgatttcccgatccacaagcccaaca
tttgagaaaggattaaaaagattcaaatggactaagtttaattcttcaggaccatatttt
actggtaaaattctttctacaacatctacagcatcaggggattttacttttccttccgaa
atagaaaagggatgtgaaactgttttatctgtcactgataaatgtgaatcctcagctctg
acagaaaacacatcctttgaaccatgttctcaaccagaaaccattccattaataaaaact
gatgcttctcttcccaaagagaatcattctggtcaacagctctgcagtgaagaagtcctg
aatgctggcattgaattgcctctagtacatgaagaagactctctttccacttccagggga
tcttttgactctaacgcagaagatgaatctatctattttacacctgaactttatgatcct
atcgatacaaatgaagaaaaaaatgaactcattggaactgacaatgacgaaaaatcacca
aataattcaaattgtattttggttgaagatctctttgaanntgaggaagaaagggaattc
agagaagttaaagctgaggaatgcacaaacagaagattgaagagtgtggtgcatagtaag
gatattaaaatgaatgacattgttagtaatgtaaaagcaacacatnaattagaactaaga
aaaacctatgagattgaatatcaaaaacttttgaagaaatcttccaaaaataggggccgg
agcaatactttcagtgcaagtatgactgagaagaatattacttatgttccaaatgactaa
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integrated database retrieval system
