Suncus etruscus (white-toothed pygmy shrew): 125996201
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Entry
125996201 CDS
T09902
Symbol
VARS1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
125996201 (VARS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
setr01007
]
125996201 (VARS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
setr03016
]
125996201 (VARS1)
Enzymes [BR:
setr01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
125996201 (VARS1)
Amino acid related enzymes [BR:
setr01007
]
Aminoacyl-tRNA synthetase
Class I (U)
125996201 (VARS1)
Transfer RNA biogenesis [BR:
setr03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
125996201 (VARS1)
Prokaryotic type
125996201 (VARS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
GST_C_2
Arc1p_N_like
tRNA-synt_1e
Jag_N
Motif
Other DBs
NCBI-GeneID:
125996201
NCBI-ProteinID:
XP_049621103
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All DBs
Position
18:complement(34839852..34859028)
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AA seq
1267 aa
AA seq
DB search
MSILYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPPPTSRTPFPPPRLPAL
EQGGLGGLWVWGATAVSQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPAL
GLRVSAQDPQAALGALGKALSPLEEWLRQHTYLAGEAPTLADLAAVTALLLPFRYVLDPA
ARRIWGNVTRWFTTCVQQPEFRAVLGEVVLYSGTRPASQPAGPEGSAPPKTAAQLKKEAK
KREKLEKFQNKQKIQQQQQPPSGEQKKPKPEKREKRDPGVITYDLPTPPGEKKDVSGAMP
DSYSPQYVEAAWYPWWEQQGFFKPEYGRSSVSAPNPRGIFMMCIPPPNVTGSLHLGHALT
NAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWREQRVNRHQLGREAFLQEVW
KWKEEKGDRIYHQLKKLGSSLDWNRACFTMDPKLSAAVTEAFIRLHDEGVIYRSTRLVNW
SCTLNSAISDIEVDKKELTGRTLLTVPGYKEKVEFGVIISFAYKVQGSDSDEEVVVATTR
IETMLGDVAVAVHPKDPRYQHLKGKSVVHPFLSRSLPIVFDDFVDMEFGTGAVKITPAHD
QNDYEVGQRHGLEAISIMDARGALVNVPPPFLGLPRFEARKMVLAELKDRGLFRGIEDNP
MVVPLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLRILPEAHQRTWHAWMDNIR
DWCISRQLWWGHRIPAYFVTVHDPAVPPGEDPDGRYWVSGRSEAEAREKAAKEFGVSPDK
ITLQQDEDVLDTWFSSGLFPFSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLG
LKLTGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIHGVSLQGLHDQLLNSNLDPS
EVERAKEGQKADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNAT
KFALRGLGKGFVPSSTSKPGGHESLVDRWIRSRLTEAVKLSNHGFQAYDFPAVTTAQYSF
WLYELCDVYLECLKPVLNGVDQVSAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPR
RTPQAPPSLCVTPFPEPSECCWKDPEAEAAMELALSITRAVRSLRADYNLTRIRPDCFLE
VADEATGALASAVSCYVQALASAGVVAVLALGAPAPQGCAVAVASDRCSVHLQLLGLVDP
ARELGKLQAKRGEAQRQALRLRERRAASGYPVKVPLEVQKADEAKLQQTEAELRKVDEAI
ALFQKML
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcctctacgtctccccgcacccggacgccttccccagcctccgagctctcatc
gctgcgcgctacggcgaggcgggagaggggcccggctgggggggagcccacccccgcatc
tgtctccagccgccccccaccagcaggacgcctttccccccaccccgcttgcctgctctg
gagcaaggagggctcggggggctctgggtgtggggagccacagctgtaagccagctgctg
tggccggcaggtttggggggccccgggggaagccgggccgcagtgcttgtccagcagtgg
gtcagttacgccgacaccgagctcatcccagctgcctgcggagccaccctgccagcctta
ggactccgggtgtctgcccaggacccccaggccgcgctgggggccctgggtaaggccctc
agccccttggaagagtggcttcggcagcacacttacttggctggggaggcccccactctg
gctgacttggcagctgtcacagccctgctcctgcctttccgatacgtcctggaccctgct
gcacgtcggatctggggtaatgtgacccgctggtttaccacttgtgtccagcagccagaa
ttccgggcagtcctgggagaagtagttctgtattcaggcaccaggcctgcctcacaaccg
gcaggccctgagggttctgcacccccaaagacagctgctcaactcaagaaagaggcaaag
aaacgggaaaagctagagaaattccaaaataaacagaagatccagcagcagcagcagccg
ccttcaggggagcagaagaaaccaaaaccagagaagagggagaagcgggatcctggggtc
attacctatgacctcccaactccacctggggaaaagaaagatgtcagtggcgccatgccg
gactcttacagccctcagtacgtggaggctgcttggtacccgtggtgggagcaacagggc
ttctttaagccagagtatgggcgttccagcgtgtcagcaccaaatccccggggcatcttc
atgatgtgcatcccaccccccaacgtcacaggctccctgcacctgggccatgcactcacc
aacgccatccaggactctctgacccgatggcaccgcatgcgtggggagaccactctgtgg
aaccctggctgtgaccatgcgggcattgccacgcaggtggtggtggagaagaaactctgg
cgtgaacagcgtgtgaaccggcaccagctgggccgagaggcctttctgcaggaggtctgg
aaatggaaggaagagaaaggtgaccgaatttaccaccagctgaagaagctcggcagctcg
ttggactggaatcgagcctgtttcaccatggaccctaaactctcagcagcagtgacagag
gccttcatccgactccatgatgagggcgtcatctaccgtagtacccgtcttgtcaactgg
tcctgcaccctcaactctgccatctctgacattgaggtggataagaaggagctgacaggt
cggaccctgcttaccgtgcctggctacaaggagaaggtggagtttggagtcatcatctcc
tttgcctacaaggtccaaggatcagacagcgatgaggaagtggtggtggcaacaactcga
attgagaccatgctgggagacgtggctgtagctgtgcaccccaaagatcccagataccag
cacctgaaggggaagagcgtggtgcacccatttctgtcacggagtctccccatcgtcttc
gatgacttcgtggacatggagtttggcacgggtgcggtgaagatcacacctgcacacgac
caaaatgactatgaggttggccagcggcatggactggaggccatcagcatcatggatgcc
cgcggggccctggtcaacgtacctccccctttcttgggcctgcccaggtttgaggccagg
aagatggttctggcagagctgaaggaccggggactgttccgtggcattgaggacaatccc
atggtggtgcccctttgcaatcggtccaaggacgtggtggagccgctgctgcggccacag
tggtatgtgcgctgtggggagatggcccaggctgccagtgctgctgtaactcggggtgac
ctccggatcctgcctgaggcccatcagcggacgtggcacgcctggatggataatatccgg
gactggtgcatctcccggcaactgtggtggggccaccgcatcccagcctactttgtcact
gtccatgatccggctgtacccccaggggaggaccctgatggccggtactgggtgagcggg
cgcagtgaggctgaggcccgcgaaaaggcagctaaagagtttggagtgtccccagacaag
atcactctccagcaagatgaggacgtattggatacctggttctcctcgggtctcttcccc
ttctccatcctgggctggcccaaccagtcagaagacctgagtgtgttctacccgggaacg
ctgctggagaccggccatgacatcctcttcttctgggtggccaggatggtcatgctgggc
ctgaagctcacaggcaggctgcccttcagggaggtctatctccacgccatcgtgcgagat
gcccatggccggaagatgagcaagtctctgggcaacgtcattgatcccctggatgtcatc
catggggtctctctgcagggcctccatgatcagttgctgaacagcaacctggatcccagt
gaggtggagagggccaaagaagggcagaaagctgacttcccagcagggatccccgagtgt
ggcactgatgccctccgctttggactctgcgcttacacatctcagggtcgagacatcaac
ctagacgtgaaccggatcctgggataccggcacttttgcaacaagctctggaatgccact
aagtttgccctccgtggccttgggaagggctttgtgccctcatctacctccaagcctgga
ggtcacgagagcctggtggaccgctggatccggagccggctgacagaggccgtgaagctc
agcaatcacgggttccaggcctacgatttcccagctgtcaccactgcccagtacagcttc
tggctctatgagctctgtgacgtctacctggagtgcctgaagcccgtgctgaatggggta
gaccaggtgtcggccgagtgtgcccgccagaccctctacacctgcctggatgttggcctg
cggcttctctctcccttcatgcccttcgtgactgaagagctgttccagaggttgcccaga
cggactccacaggcaccgcctagcctctgtgttacccccttcccagagccctcagagtgc
tgctggaaggaccctgaggcagaagccgctatggagctggccctgagcatcacacgagct
gtgcgctccctgcgagctgactacaatctcacccggatccggcccgactgttttctggaa
gtggctgatgaggccaccggcgccctggcctcggcagtgtcgtgctacgtgcaggcactg
gccagtgcaggagtggtggccgtcctggccctgggcgctcccgccccccagggctgcgct
gtggccgtggcctctgaccgctgctccgtccacctgcagctgctgggactggtggacccg
gcccgagagctgggcaagctgcaggccaagcgtggtgaggcacagcggcaggcgttgcgt
ctgcgggagcgccgtgctgcctcaggctaccctgtgaaagtgcccctcgaagtgcagaag
gcagatgaagccaagctccagcagacagaagccgagctcaggaaggtggatgaggctatc
gccctgtttcaaaagatgctgtga
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