Suncus etruscus (white-toothed pygmy shrew): 125996373
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Entry
125996373 CDS
T09902
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03082
ATP-dependent chromatin remodeling
setr04714
Thermogenesis
setr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125996373 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125996373 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125996373 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
setr03000
]
125996373 (ARID1B)
03021 Transcription machinery [BR:
setr03021
]
125996373 (ARID1B)
03036 Chromosome and associated proteins [BR:
setr03036
]
125996373 (ARID1B)
Transcription factors [BR:
setr03000
]
Eukaryotic type
Helix-turn-helix
ARID
125996373 (ARID1B)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125996373 (ARID1B)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125996373 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
PFF1_TM
Presenilin
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
125996373
NCBI-ProteinID:
XP_049621269
LinkDB
All DBs
Position
18:complement(18885224..19207458)
Genome browser
AA seq
1797 aa
AA seq
DB search
MDPMVMKRPQLYGMGGNPHSQPPQSGPYPTGSYGPPGPQRYPIGIQGRTPGAMGGMQYPQ
QQMPPQYGQQGVSGYCQQGQPAYYNQQPPPHLAPQAQYLQSQPPQRYQAQQDLSQEGYGT
RSQAPLAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGD
QSNPAQSPFSPHASPHLSGIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGS
QSESSSHPALSQSPMPQERGFMAGSQRNVPMSQYGPQQGGPSMSPHPSPGGQMHPGISGF
PQSNSSGTYGPQMGQYGPQGSYSRPPTYTGVPSASYSGPGPGMGINANNQMHGQGPSQPC
GAMPLGRMPPAGMQNRPFPGNMSSMTPGSPSMSQQGGPGMGPPMPTVNRKAQEAAAAVMQ
AAANSAQSRQSNFPGLNQSGLMASSSPYNQPVNNNTGLVNTQAPPYSMASNMVNSSTASI
GLADMMSPGESKLPMALKADSKEEGTASSESKAKDSYSSQGVSQPPTPGNLPVPSPMSPS
SASISSFHGDESDGISSPGWPKTPSSPKSSSSTTTGDKITKVYELGSEPERKLWADRYLA
FMEERGSPVSSLPAVGKKPLDLFRLYICVKEIGGLAQVNKNKKWRELATNLNVGTSSSAA
SSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQST
GSSSMAEGPGDLKPPTPASTPHGQMTPMQGGRSSTVNVHDPFSEASESSFPKRNSMTPSA
PYQQGMGMPDVMGRVPYEPNKDPFGGMRKVPGSSEAFLAQGQMPASSMQDVYNQNPSGAM
SALGMGQRQQFPYGASYERRHEPYGQQYPAQAPPSGQPPYGGHQPGLYPPQQNYKRHMDG
MYGPPAKRHEGDMYNMQYGNQQPELYNQYGGSFPGPERRPLQGQYPYPYGRERMQGPGQM
QPHGLPPQMLGGPLPSSSGEGPQQSMWAARNDMPYPYQNRQGPGGPAQAPPYPGLNRTDD
LMVPDQRINHESQWPSHVSQRQPYLSSSASMQPLARPPQPSYQTPPSLPNHISRAPSPAA
FPRALESRMSPSKSPFLPSMKMQKVLPSVPTAQVAGPPPQPPPIRREIIFPPGSVEASQP
VLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFSLSQLSG
FLELLVEYFRKCLIDIFGILMEYEVGDPSQKALDHHAAKSEEGQAEDFGREEEDAGSLDE
DEEDEDEEEEEEEDHKAREKTAAAGEQEAVAEDEKEEKNRRVPRMPETSADSGEKPRQAS
KFDKLPIKIVKKNNLFVVDRSARLGRVQEFDSGLLHWQLGGGDTTEHIQTHFESKMEIPP
RRRPPPPAPGPTGRKKEPEVKGEEASVSAVPTGEEPLEKSILATIDDVLSARPGALSEDA
HPGPPADSGKFPFGIHQAKSHRNIKLLEDEPRSRDEAPLCTIAHWQDSLAKRCICVSNIV
RSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEW
WWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPVLDGLLHWMVCPSAEAQDPFPTVGP
NSVLSPQRLVLEALCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSM
ALLSNLAQGDALAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSV
DMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atggatcccatggtgatgaagaggcctcagctgtatggaatgggtgggaacccccattcg
caacccccgcagagtggcccgtaccccaccggctcctatgggcccccaggtccccagcgg
tatccaatcggcatccaaggtcggaccccaggagccatggggggaatgcagtacccacag
cagcagatgccgcctcagtatggacagcaaggtgtgagtgggtactgccagcagggccag
ccggcctactacaaccaacagccgccgcctcacctcgccccgcaggcgcagtacctgcag
tcccagcccccgcagaggtaccaagctcagcaggacctgtctcaggaaggctatggaact
aggtctcaagctcctctggctcccggcaaacccaaccatgaagacttgaacttaatccaa
caggaaagaccatccagtctaccagatctgtctggctccattgacgacctgcccacagga
acagaagccactctgagctcagcagtgagtgcgtcaggctccacgagcagccaaggggac
cagagcaacccggctcaatcacctttttctccacacgcatccccacacctctccggcatc
ccagggggcccatcaccgtctcccgtcggctctccagtggggagcaaccagtcgcgctcc
ggccccatctctcctgccagcatcccaggctctcagatgcctccacagcctcctgggagc
cagtcagaatccagttcccatcctgccttgagccagtctccaatgccacaggaacgaggg
ttcatggcaggctcccagagaaatgtcccgatgtcccagtatggaccccagcaaggtggg
ccatccatgtcacctcacccttctcctggaggtcagatgcacccagggatcagcggcttc
ccacagagcaactccagcggcacctacgggccccagatgggccagtacggaccccaaggt
agctactccagacccccaacatatactggggtgcccagcgcaagctacagtggtccggga
cctggcatgggcatcaatgccaacaaccagatgcatggacaaggaccaagccagccgtgt
ggtgctatgcccctgggacggatgccacctgctggcatgcagaacaggccatttccgggc
aacatgagcagcatgaccccgggctcacccagcatgtcccagcagggaggcccaggaatg
ggaccccccatgcctacggtgaaccgcaaggcgcaagaggcagctgctgcagtgatgcag
gcagccgccaactcggcccaaagcaggcaaagcaactttcctggcctgaaccagagtgga
ctcatggcctccagctccccctacaaccagcctgtgaacaacaacaccggcctagtgaac
acccaggcgcccccttacagcatggcatccaacatggtcaacagctccacagcatctata
ggtcttgcagatatgatgtctccaggtgaatcgaagttgcccatggccctcaaagcagac
agcaaagaagaaggcactgcctcgtccgagagcaaggcaaaggatagctacagctcccag
ggggtctctcagcctcccacccctggcaacctgccagtgccctcccccatgtcccccagc
tctgctagcatctcctcctttcacggggatgagagcgatggtatcagcagtccaggctgg
cccaagactccatctagccctaagtccagctcgtccaccacgacaggggataagatcacg
aaggtgtacgagttgggcagtgagcccgagaggaagctgtgggctgaccgctacctggcg
tttatggaggagaggggctctcccgtgtccagcctacccgccgtgggcaagaagccactg
gacctcttccgcctctacatctgcgtcaaggaaatagggggcctggctcaggttaacaaa
aacaagaaatggcgtgaactggccaccaacctgaatgttggtacatcgagcagtgcagcg
agctccctgaagaagcagtacatccagtacctgtttgcatttgagtgcaagatcgagcgt
ggggaggagccaccgcctgaagtcttcagcaccggggacaccaagaaacagcccaagctg
cagccgccctctcctgctaactcagggtctctgcaaggcccccagacccctcagtcaact
ggcagcagctcgatggcagagggtcctggtgacctgaagccacccaccccggcatccacc
ccgcacggacaaatgaccccaatgcaaggtggcaggagcagcaccgtcaatgtacatgac
cccttctccgaggccagcgagtcgtccttccccaagcggaactccatgaccccaagtgcc
ccctaccagcagggcatgggcatgccagatgtgatgggcagggtcccctatgagcccaac
aaggaccccttcggtgggatgagaaaagtgcctggaagtagtgaggccttcctggcgcag
gggcaaatgcccgccagcagcatgcaggacgtatacaaccagaacccctcaggggctatg
tctgctcttggcatggggcagaggcagcagttcccctatggagccagctatgagcgaagg
catgaaccttatggacagcagtacccagcgcaagcgcccccctcaggacagccgccatat
ggagggcatcagcccggcctgtacccgccacagcagaactataagcgccatatggacggc
atgtacgggcccccagccaagcgccacgagggagacatgtacaacatgcagtatggcaac
cagcagccggagctctacaaccagtatgggggctccttcccgggccctgagcggcggcca
ctgcagggccagtacccctacccctacggccgagagcggatgcagggcccagggcagatg
cagccacacgggctcccaccacagatgctgggcggcccgctgccctcctcgtctggcgag
ggccctcagcagagcatgtgggcagcccgcaacgatatgccttatccctaccagaaccgg
cagggccccggcgggcctgcacaggcccccccttacccaggcctgaaccgcacggatgac
ctgatggtgcccgaccagagaatcaatcacgagagccagtggccttcgcacgtcagccag
cggcagccttacctgtcatcgtccgcctccatgcagcccctcgcgcggccccctcagccc
tcgtaccagaccccaccgtcactgcccaaccacatctccagggcgcccagccctgccgcc
ttcccacgtgccctggagagccgcatgtccccgagcaagtccccattcctgccctccatg
aagatgcagaaggtcctgccctcagtccccacggcccaggtggctgggccgcccccccag
ccaccacccatccggcgggagatcatcttccctccgggatcggtagaggcctcgcagcca
gttctgaaacagaggcgaaagattacctcaaaagacatcgttactcccgaggcctggcgt
gtgatgatgtccctaaagtcaggtcttttggccgaaagtacgtgggctctggacactatt
aatattctcctgtatgatgacagcactgtcgctaccttcagcctctcccagttgtctgga
tttctcgaacttttagtagagtactttagaaaatgcctgattgacatttttgggattctt
atggagtacgaagtgggcgaccccagccaaaaagcacttgatcaccacgcagcaaagagc
gaggagggccaggccgaggatttcgggcgagaggaggaagacgctggctctctggatgag
gacgaggaggacgaggacgaggaggaggaagaggaggaggaccacaaggccagggaaaag
acagcggcagcaggcgagcaggaggccgtggcagaggacgagaaggaggagaagaaccga
agggtccctcggatgcctgagacatctgcggattctggggagaagcccaggcaagccagc
aagttcgacaagctgcccatcaagatcgtcaagaagaacaacttgttcgtggtcgaccgg
tcggccaggctgggccgcgtgcaggagtttgacagtggcctccttcactggcagctaggt
ggtggggacaccacggagcacattcagactcactttgagagcaaaatggagattcccccg
cgccgaaggccaccaccacccgcaccaggccccacaggcaggaagaaggagccagaggtg
aaaggcgaagaagcttctgtcagtgcagtccctacaggcgaggagcccctagagaagagc
atcctggccaccatcgatgatgtactgtcagctcgcccgggtgccctgtccgaagatgcc
cacccaggccccccggccgacagcggcaagttccccttcggcatccaccaggccaagagc
caccgcaacatcaagctgctggaggatgagccacgaagccgggacgaggcaccgctgtgc
accatcgcgcactggcaggactcgctggccaagcgctgcatttgtgtgtccaacattgtc
cgcagcttgtcctttgtgcctggcaatgatgccgagatgtccaaacatccgggcttggtg
ctgatcctggggaagctcatcctcctccaccacgagcatccagagaggaaacgggccccg
cagacctacgagaaggaggaagatgaggacaagggggtggcctgcagcaaggatgagtgg
tggtgggactgcctcgaggtcttgcgggataacacgctggtcacgctcgctaatatctcc
gggcagctggatttgtccgcatacacggaaagcatctgcttgccggtcctggacggcctg
ctgcactggatggtgtgcccgtcggccgaggcccaagaccccttcccaacagtgggcccc
aactccgtcctgtctccccagagactcgtactggaagccctctgcaagctgagcatccag
gacaataatgtggacctcatcctggccacgccgcccttcagccggcaggagaaattctac
gccacattggttcggtacgtgggggaccgcaaaaacccggtctgccgcgagatgtccatg
gcgctcttgtcgaaccttgcccagggggacgcgctggcggccagggccatcgccgtgcag
aagggcagcatcggcaacctgatcagcttcctggaggatggggtcaccatggcccagtat
cagcagagccagcacaacctcatgcatatgcagcccccgcctctggagcccccgagcgtg
gacatgatgtgccgagccgccaaggcgctgctggccatggcccgcgtggacgagaaccgc
tcggagtttctcctgcacgagggccgcttgctggatatctccatctcagccgtgctgaac
tcgctggtggcgtcagtcatctgtgacgttctctttcagatcgggcagttatga
DBGET
integrated database retrieval system
