Suncus etruscus (white-toothed pygmy shrew): 125996380
Help
Entry
125996380 CDS
T09902
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
125996380 (SCAF8)
03041 Spliceosome [BR:
setr03041
]
125996380 (SCAF8)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125996380 (SCAF8)
Spliceosome [BR:
setr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
125996380 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
125996380
NCBI-ProteinID:
XP_049621278
LinkDB
All DBs
Position
18:complement(21407059..21534788)
Genome browser
AA seq
1242 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTP
VLASTTAALSNTPGTPVTPATPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQ
LIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQGVSFHKKLMD
RFDFGDDSEHNEEPKKEIPTPQLSHVSESVNNSIFHQIAEQLQQQNLEQLRQQLLEQQHP
QKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDAVEEE
IFDQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRS
YSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIES
INMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVD
LGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKSSEPVKEPVPAAPSPAPPEKEP
VATTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFPVSMPVPPPGYNPIPPPPFLRASFNP
SQPPPGFMPPPVPPPIVPPPAIPPVVPTSLVQPPLSMTPETVKEVGFGGLVLPGSSVTSS
LAAPALPSGNVFNPPTKQGEPEEKVPHLLDHQLASGDNPRPVLPNDISSSSAILGGQPPN
VTSNSGIMGVQRPTISSNSEILGVRPSNVSSTAIIGAQPPNILNNSGMLGLQPPNVSNSS
GLMGVLPPNIPNNSGLIGVQPPNVPNPGLLGTQPPAGPQNLPPLNIPGQRMPVMPILDIR
PGLIPQAPGPRFPLIQPGIPPQRGLPPPGVLDSALHPPPRGPFPPGDLFSQPERPFLVPG
RPSIDSVPNPDKRIPVGNENMQQEGDRDYRFPPIETRESLRPPPMDVRDVVGRPVDPREG
PVRLPLDAREHFGRPPMDLRENLVRPGLDHLGRRDHFGFNPEKPWGHRDFDEREHRVISV
FGGPKGLHEERGRFRAGAYRFDPRSGPWNRGFVPEVHRDFDDRRRPWERQRDRDDRDFDF
CREINGNRLGRERIPNTWVPPPHARVFEFFEGPTAQRKGDTVPQVNGENPERHTQPPPLP
VQSDPELYEKLAPSTELNKEKSDTVAEIESEPVVESTETEGT
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgacccagattactaaagcagccatcaaagctattaagttttataaacatgtggtacag
agtgtggagaaattcattcagaaatgtaaaccagaatacaaggtacctggactttatgtc
atcgactccattgtacgacaatctcgacatcagtttggccaagaaaaggatgtctttgca
cccagatttagcaataacatcattagcacttttcagaatttatatcgttgccctggggat
gacaagagtaaaatcgtgagagtattaaacctatggcagaagaataatgtctttaaaagt
gagatcattcagccgcttttggacatggctgcaggtatcccccctccagtagtgacccct
gtcctggccagtacgactgctgctctgagcaacaccccagggactcctgtgacaccggca
actccagccaatgtcgtccaaggtttgcccgacccctgggtttcgcagatcacaaacacg
gacacacttgcagctgttgcacagatcctgcagagtcctcaaggacaacagcttcagcag
ttaatacagactctgcaaatccagcagcagaaaccgcagccctccattctgcaagccctg
gacgccggcctcgtggtacagctgcaggcactcactgcgcagctcacagcagctgctgct
gcagccaacacactcaacccccttgagcagggcgtgtcttttcacaagaaattgatggat
agatttgattttggggatgattctgagcataatgaagagccgaaaaaggaaattccgacc
ccacaactttctcatgtttcagaatctgtgaacaattccatctttcatcaaatagcagaa
cagttgcagcagcagaaccttgaacagctccggcagcaactcctggaacagcagcatcct
caaaaggcaactcctcaggacagtcaggagggaacattcgggtccgagcattcagcgtca
ccttcacagggcagtagtcagcagcatttccttgaacctgaagcaaatttggatgattcc
atagatattcagcaacaggatatggatatagatgaaggtcaagatgctgtggaagaagag
atctttgaccaagaagccaagaaagtggctgttcgctcaagatcacgaacacattcacga
tcacggtcaaggtcaccaagaaagcgaaggtctcgatcccgctctggttctcggaaacgc
aaacaccgaaagcgctcacgttcacgttcgagggaaaggaagcggaagtcgtcccgttcc
tactcgagtgagcggcgagcaagagagcgagagaaagaacggcagaagaagggcctgccc
ccgattcgctccaaaacgctcagcgtatgtagtacgactctctgggtcggtcaggtggac
aagaaggctacgcagcaagatctaaccaacctatttgaagagtttgggcaaattgagtct
attaatatgattcctcccaggggctgtgcttatgtctgtatggttcatcgacaagatgca
tttcgggctcttcagaaacttagttctggatcatataaaattggatctaaggttattaag
attgcttgggccttaaacaaaggtgtaaaaacagaatacaaacagttctgggatgtggat
cttggagttacttacataccatgggaaaaagttaaagtggatgacttagagggttttgca
gaaggaggcatgattgatcaggaaactgtgaatactgaatgggaaactgtgaaaagctca
gagcctgttaaagagccagtgcccgcagcgccgagcccagcacccccagagaaggagccc
gtggctaccactcaggctgaggttttccctccgcctgtagcgatgcttcagatcccagta
gcaccagctgtgcctgcagttagtttagtgccaccagcatttcctgtgtcgatgccggtt
cctcctcctggctacaatccaattcctccacctccttttcttcgagcaagttttaaccct
tcacagcctcctcctggtttcatgccacccccagttcctcctcctattgttccaccacct
gctattccaccagtcgttccaacatctttagtacagccgccattatccatgactccagag
actgtgaaagaggttggatttggtggccttgtcttaccaggcagttctgttaccagcagc
cttgctgctcctgctctgccatctggaaatgtttttaatcctccaactaaacaaggagag
cctgaagaaaaagtacctcatctcctagaccaccagcttgcttctggtgacaaccccaga
ccagtgcttccaaatgatatttcaagtagctctgcaattttaggaggacaaccaccaaat
gtgacaagcaattctggaattatgggagtccaaagaccaactatatcaagtaattcagaa
attcttggagttcgtccatctaatgtttccagtactgcaattattggagcccagccacca
aatattttaaataactctggaatgttgggattacaaccacctaatgtgtcaaacagttct
ggactaatgggtgtcttacctcctaatatcccgaacaattccggacttataggagtacag
ccaccaaatgttccaaatcctggacttttgggaacacagccaccagctggacctcagaac
ctgccccctttgaatattcctggccagaggatgcctgtaatgccgattttagacattcgc
ccgggattaatcccacaggcccctggaccaaggtttcctctcattcagcctggaattccc
ccccagagagggctccctcctccaggggtacttgattcagctcttcacccaccgccccgg
ggtccttttcctcctggagacttattcagtcagcctgaaagacctttcctcgttcctgga
agaccaagcatagacagtgtacctaatcctgataaaaggataccggttggaaatgaaaac
atgcagcaggagggagaccgagattatcggttccctcccattgaaactcgggaaagcctc
aggcctcccccgatggacgtcagggatgtggttggacgacctgtcgacccccgggagggt
cccgtcaggcttccgctagacgcaagggagcatttcgggaggcctcccatggatctccga
gaaaatctcgttagacccggcctcgaccatcttgggcggagagatcactttggctttaat
cccgagaaaccctggggccaccgagattttgatgagagggaacatcgagtcatctctgtg
ttcgggggtccgaaaggcttacacgaggaaagagggcgatttcgagcgggagcctatcgg
tttgatcctcgaagtggtccttggaatagaggctttgtaccagaagtccacagagatttc
gatgaccgcagaagaccctgggagaggcagagggatagggatgacagagattttgatttc
tgcagagaaatcaatggcaaccgtctgggacgagagagaatcccaaacacctgggtgccc
ccacctcatgctcgggtgtttgagttctttgaagggcccactgctcagcggaaaggtgac
acggtgcctcaggtcaatggtgaaaatcctgagagacatacgcagccgccacctttacct
gtacaaagtgatcctgaactctatgaaaaattggcgccttcgactgaacttaacaaggag
aagagtgacacagtcgctgagatagagagtgaaccagtggtagaaagcacagaaactgag
gggacataa
DBGET
integrated database retrieval system
