Suncus etruscus (white-toothed pygmy shrew): 125996435
Help
Entry
125996435 CDS
T09902
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03013
Nucleocytoplasmic transport
setr03015
mRNA surveillance pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125996435 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
125996435 (DDX39B)
03015 mRNA surveillance pathway
125996435 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
125996435 (DDX39B)
03041 Spliceosome [BR:
setr03041
]
125996435 (DDX39B)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125996435 (DDX39B)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125996435 (DDX39B)
Spliceosome [BR:
setr03041
]
Complex C
Other components
EJC/TREX
125996435 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125996435 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125996435
NCBI-ProteinID:
XP_049621339
LinkDB
All DBs
Position
18:complement(34526354..34538277)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaatgagctcttggactatgaagaggacgaagtggagaca
gcagctgggggggacgggactgaggcccctgccaagaaagatgtcaagggctcctacgtc
tccatccacagttctggttttcgtgacttcctgctcaaacccgagctgctccgggccatt
gttgactgtggctttgagcacccatcagaagtccagcatgagtgtatccctcaggccatt
ctgggaatggatgtcctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctagccacattgcaacagctggagccagtcactgggcaggtgtcggtgctggtaatgtgt
cacacacgtgaattggcatttcagatcagcaaagaatatgaacgattctctaaatacatg
cccaatgtcaaggttgcagtattttttggtggtctgtctatcaagaaggatgaagaggta
ctgaagaagaactgcccacatatcgtcgtgggaactcctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagtaaagagatccgcccagtgtgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcgctgc
attgccctggctcaactcctagtggaacagaacttccccgccattgccatccaccgtggg
atgccccaggaagaaaggctatctcggtatcagcagtttaaagatttccaacgacgaatt
cttgtggcaaccaacctatttggtcgaggcatggacattgagcgggtgaatattgccttt
aactacgacatgcctgaagattcagacacatacctgcatcgggtggccagagctggcagg
tttggtacgaagggcttggccatcacatttgtgtcagatgaaaatgatgcgaagattctc
aatgatgtgcaggatcgctttgaagtcaatatcagcgaactgcctgatgagatagacatc
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
