Suncus etruscus (white-toothed pygmy shrew): 125996569
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Entry
125996569 CDS
T09902
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04120
Ubiquitin mediated proteolysis
setr04137
Mitophagy - animal
setr04141
Protein processing in endoplasmic reticulum
setr05012
Parkinson disease
setr05014
Amyotrophic lateral sclerosis
setr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125996569 (PRKN)
04120 Ubiquitin mediated proteolysis
125996569 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
125996569 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
125996569 (PRKN)
05014 Amyotrophic lateral sclerosis
125996569 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
125996569 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
125996569 (PRKN)
04121 Ubiquitin system [BR:
setr04121
]
125996569 (PRKN)
03029 Mitochondrial biogenesis [BR:
setr03029
]
125996569 (PRKN)
Enzymes [BR:
setr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
125996569 (PRKN)
Membrane trafficking [BR:
setr04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
125996569 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
125996569 (PRKN)
Xenophagy
Other xenophagy associated proteins
125996569 (PRKN)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
125996569 (PRKN)
Mitochondrial biogenesis [BR:
setr03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
125996569 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
Rad60-SLD
IBR
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
125996569
NCBI-ProteinID:
XP_049621466
LinkDB
All DBs
Position
18:complement(6689273..7798129)
Genome browser
AA seq
464 aa
AA seq
DB search
MIVFVRFNSSHGFPMEVSADTSIFQLKEAVAKRQGVPADQLRVIFAGKELKNDLTVQSCD
LEQQSIVHIVLRPHKTGDGRDPPAGLGSRKARGRLASEPESLTRVDLSDSILPADSVGLA
IILKDEREPDTLCPGKPGRPSYNSFYVFCKEPCQRVQPGKLRVQCGTCHQATLTLAQGPS
CWEDVLIPNRMNGECQSPSCSGTRAEFFFKCGAHPTSDKETSVALNLITTNSRAITCIAC
TDIRSPVLVFQCNDRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCRDSLIREL
HHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPGMKRVICEEGSGLGCG
LVFCRDCKEPDHEGDCSTAYEAEGATAQAYRVDEVAAEQARWEKASKETIKSTTKPCPRC
RVPVEKNGGCMHMKCPQPQCQLEWCWNCGCEWNRLCMGDHWFDV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgttcgtcaggttcaactccagccacggcttccccatggaggtcagcgccgac
accagcatcttccagctcaaggaggcggttgctaagcgacaaggggttccagctgaccag
ttgcgggtgatcttcgcggggaaggagctgaagaatgacttgacagtgcagagctgtgac
ctggagcagcagagtatcgtccacattgtgctgagaccccacaaaacaggggatggaagg
gaccccccagccgggcttggctcacgaaaggctaggggccgcttggcaagtgagccggag
agcttgacccgtgtggatctcagtgattccatcctccctgcggattcagtaggactggct
atcatcctgaaggacgaaagagaaccagacaccctgtgcccaggaaagccaggtcggcca
tcctacaacagcttctatgtcttctgcaaagagccctgccagcgagtgcagccaggcaag
ctccgggtgcagtgtggtacctgccaccaggccacactaaccttggctcagggcccttct
tgctgggaagatgtcttgatccccaaccgcatgaatggggaatgccagtctccaagctgt
tctgggacaagggcggaattcttctttaaatgtggagcacacccaacctctgacaaggaa
acgtcagtagccttgaacctgatcaccaccaacagccgtgccatcacctgcatagcctgt
actgatatcaggagcccggtgcttgttttccagtgcaatgaccgccatgtgatctgttta
gactgtttccacctctactgtgttaccagactcaatgacaggcaatttgttcatgacccc
cagcttggatattcactgccttgtgtggctggctgccgcgactctctcatccgagagctt
catcacttcaggattcttggagaagagcagtacaacaggtaccagcagtatggtgcagag
gaatgtgtcctgcagatgggcggtgtgctgtgtcccaggcccggctgtggtgcagggctg
ctaccagaacctgggatgaagagagtcatatgcgaagaaggcagtggcctgggctgtggg
ctcgtcttctgcagagactgcaaggagccggaccacgagggcgattgcagcaccgcatat
gaggccgagggggccactgcccaggcctaccgtgtggatgaggtggccgcagagcaggcc
cgctgggagaaggcatccaaggagaccatcaagagcaccaccaagccctgcccccggtgc
cgggtgcccgtggagaagaatggaggatgcatgcacatgaagtgcccgcagccccagtgc
cagctcgagtggtgttggaactgcggctgtgagtggaaccgcctttgcatgggggatcac
tggttcgacgtgtag
DBGET
integrated database retrieval system
