Suncus etruscus (white-toothed pygmy shrew): 125997273
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Entry
125997273 CDS
T09902
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125997273 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
setr03041
]
125997273 (PRPF38B)
Spliceosome [BR:
setr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125997273 (PRPF38B)
Complex C
U4/U6.U5 tri-SnRNP related factors
125997273 (PRPF38B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
125997273
NCBI-ProteinID:
XP_049621670
EnsemblRapid:
ENSSRTG00000005597
LinkDB
All DBs
Position
19:27189208..27198801
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AA seq
551 aa
AA seq
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MANNSPALTGNAQQQQLQQQQLQQQQLQQQQLQQQQCGGGGVGLKPALSGKQGNVLPLWG
NEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTG
MCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPP
TDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQ
QIKTRPRKIKKDGKEGTEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHRESHGSSSF
DRELEREKERQRLEREAKEREKERRRSRSIDRGLDRRHSRSRERHRSRSRSRDRKGDRRD
RDREREKENERGRRRDRDYDKEREKERERSRERSKERRSRGELEEKKHKEDKDDKRHRDD
KKESKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGS
QGRTDSVEKSRKREHSPSKEKSRKRSKSKDRSHKRDHSDSKDQSDKQDRRRSQSIEPENQ
EKQHKSKDETV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaacagccccgcgctgacaggcaacgcgcagcagcagcaactgcagcagcaa
caattgcaacagcagcagttgcagcagcagcagttgcagcagcagcaatgtggaggaggc
ggcgtaggcctcaagcccgccctgtctggcaagcaaggcaacgtgctccccctctggggc
aacgagaagaccatgaacctgaaccccatgatcctcaccaacatcctgtcgtcgccctac
ttcaaggtgcagctctacgagctcaagacctaccacgaggtggtggacgagatctacttt
aaggtcactcatgtggagccgtgggagaaaggaagcaggaaaactgctggccagacaggg
atgtgcggaggggttcgaggtgttggaacaggaggcattgtttccacggcattttgccta
ttatacaaattatttactctgaagttaactcgcaaacaagtgatgggtcttataacacac
acagattctccgtatatccgagcccttggatttatgtatataaggtatacacagcccccc
acagacctctgggattggtttgaatccttccttgatgatgaagaggacctagatgtgaag
gctggcggaggctgtgtaatgaccattggagaaatgctgcgatcttttctcacaaaactc
gagtggttttctaccttgtttccaagaattcctgttccagttcagaagaatattgatcaa
cagattaaaactcggcctagaaaaataaaaaaagatgggaaagaaggcacagaggaaata
gacagacatgttgaacgaaggcgttcaaggtctcctagaagatctctgagtccacggagg
tctccaagaagatcaagaagtagaagccatcatcgggagagtcatggatcttctagtttt
gacagggaattggagagagagaaagaacgccagcgactagagcgggaagccaaagaaagg
gaaaaagaaaggcgaagatctcgaagtattgatcgggggttggaccgcaggcatagcagg
agtagagaaaggcatagaagtcggagtcggagccgtgatagaaaaggagatagaagggac
agggaccgagaaagagagaaagaaaatgaaagaggtagacgaagagaccgtgactatgat
aaagagagagaaaaagagagagagcggtcaagagaaaggtccaaggaacggagaagtagg
ggtgagttagaggagaagaaacacaaagaagacaaggacgataagcgacatagagatgac
aaaaaagagtccaagaaagagaaaaaacacagtagaagtagaagcagagaacggaaacat
agaagtcggagtagaagtagaaatgcaggaaaacgaagtaggagcaggagcaaagagaag
tcaagtaaacataaaaatgaaagtaaagaaaaatcaaataagcgaagtagaagtggcagt
caaggaagaactgacagtgttgaaaaatcacgaaaacgggaacatagccccagcaaagaa
aaatctagaaagcgtagcaaaagcaaagaccgttcccacaaacgcgatcacagtgatagt
aaggaccagtctgacaaacaagatcgtcgacggagccaaagtatagaaccagagaaccaa
gaaaaacaacataaaagcaaagatgagactgtgtaa
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