Suncus etruscus (white-toothed pygmy shrew): 125997902
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Entry
125997902 CDS
T09902
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04820
Cytoskeleton in muscle cells
setr04974
Protein digestion and absorption
setr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125997902
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125997902
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125997902
09142 Cell motility
04820 Cytoskeleton in muscle cells
125997902
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125997902
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125997902
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
125997902
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
125997902
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125997902
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125997902
Hyaluronan
Extracellular matrix or blood plasma proteins
125997902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
Motif
Other DBs
NCBI-GeneID:
125997902
NCBI-ProteinID:
XP_049622043
LinkDB
All DBs
Position
20:25278990..25392892
Genome browser
AA seq
2365 aa
AA seq
DB search
MESWKTYWAVIFLAASFDLIKSQRIVCRKASVGDVVFLVNTNIKPQYAHIMRSFLNNVIQ
GFNITKETVRVGLALYSDVPHSEFLLSTYHYKNQMLKHIQKLQFTPGGNKMGSALQFLLD
HYFQETAVSRAGQGVPQIAVVISSGIAEDHLQEPAEAFRRLGIILYAIGIKDAVLTELKR
VASNPVEKFTTYVPSFSVLGKLAPKLRQELCDILAKEVQPDNRISPACRDAMLADXLLLI
DNSTSIESQYFQKEKKFLYSASWKINIGSDXVXVDLVQYNNIYSAFQQNQYAQRSMVLEK
IQNLSIEQEVQTQGVPXNQLLDXGSXQLGQGXVPQIVTRIRDGESIDEAQEAAGMLKEDG
VVYLVGIKVLYIHGLNKIDNKLFEKLLFNRESLAFYRKFSGRFLQTQCLAVESKIKELTK
TYADVVFLADTSQDTSRASFQWMQTFISKVVGLLDVGKDKYRIGLAQYGGQGHTEFLFNT
YQTQNDIIAHIHDHFVFRGGSRRTGRALRYLQETFFQEAAGSRFLQGIPQYAVVISAGKS
SDEVKDAAQILKEKGVKVMSVGVQDFDRRELEYIGSPSLVYEKQGQEGVREIIQDVNVVL
QGTGREFTIEVEKEAISACPTAIPADVVFLIEDFSRVRHSNFQQVVSFLKTMVSSLRIHP
DVVRMGLVFYSEESKLEFSLDTYQTASQIFGHLDKLTYRERRGGTKTGAALDFLRNKVLL
PEMGGRRMKGVKQIAVVITENSSQDSVARPASLLRKAEVTIYTVSTQFTESKDLEKIASY
PSWKHVVHLESFLQLSVVGNMIKNQLCPEVVGRSVSSSGMSFVLQTGCAQVEKADIYFLI
DGSDSIQQDDFLEMKMFMNEMIKIFRVGPDSVQFGVVQYSEGVSIHFILNQYSSVVDLKA
AIDDIQKRSGGTETGSALMTVAQAFADTARSGVPWYLIIITAGKSEDSVAIPIEVLKREG
VNIYAIGVRDANIAELQEIANDKAFFVHEFDSLKAIQQEVIQDICSSESCKNRKADIIFL
IDGSESISSQNFEKMKAFMKRLVSHANIGPEEIQIGLLQFSSTPQEEFRLNQYYSKVDIY
RAISDMQQLNDGTRTGKALSFTLPFFDGSRGGRESVHQYLIVITDGVAQDNVVIPAQALR
DRNIIIFAIGVGEAKHSQLLEITNDEDKVYYGEKFESLQNMEKEILFKVCIPQGCSVDLS
IGIDISTPTKQVEQKLQQLLPELMHHLAFLPNISCNAPTQINTMFRFLALGSNGQLTFDS
GLGKLNNDSIQVFLHQQTAQSSHMNVDFLQSLGNHALHSSAKVKVLLVFTDGLDDNLQAL
KIISELLRNKGLSGLLFVGLENVHKLEELLELEFGRGFAYNQPLSLSLPSLPTTLLRQLV
SLFFQKHCCNIYAKCFGDDGHRGGSGNLGKKGKKGFDGLPGYSGEEGQHGERGPRGFPGL
QGEQGCSGARGPQGARGFSGEKGNSGEDGLDGLDGEQGNYGIPGPSGEKGNQGKRGLTGP
PGKPGERGAPGLRGDPGDPGLDSYIQGSKGEKGRRGHLGSSSFDGPQGDTGNIGARGSRG
RRGQPGLKGLNGRIGQRGFQGERGHPGSKGPRGRQGPPGIFGQKGFQGIQGHLGPQGPKG
SEGKYGPMGLKGDIGDPGIKGPQGKQGPRGQSGYFGPDGYGYPGRKGKKGEYGFPGYPGA
QGEDGDLGHPGEKGAKGIKGRRGNAGFPGLVGTSGDQGPPGPEGIKGPKGLVDKKPCEIV
DLIRENCRKLKTVQRSQNWSMGIDHELKTLITSGLDSDLGVSIFIIKGSCVSKCPVFPTE
VVFALDMSSGVSQLEFERMRDILISLLMKMEISESNCPTGARVAIVSYNSKTNYLVRFSD
YKGKLALLQAVRKISLEQSSESRNLGDSMRFIGRHVFKHVRSGLLVRKVAVFFQAGWAYG
VNAVVTAILELSALDITSAIITFTEEHNLPEALLMEETNRFHLFIWETKYQQDVEHMARC
TLCYDMCHPAPGCRPETPGPLEVDADLVFLVDYSQLVDTNLYHAALNLVSATLHNLEISA
QPSVSYQGTRAALMIHTTQGYWPGRGSLPVLVAFNLTSYNKRKQMLQRVQDVSHRSLQGE
PALGHSLEWTLNNVLLTAPLPRRKQVLLAIVASETSSWDQEKLRTLSLEAKCKGITLFVL
ALGPGVGTVELEELALVASTPLEQHLLHLRGVSDQELAYASRFIRAFLNIFKSGTNQYPP
PELIEECGGPNRGDTRLKSLLPLSGLEAPDAITAFLEEQSKVLATSTIRQESLDIFARNG
YEAEENQVKRLLKQNETGKKEPSGTVDGPCSLEPMEGECQDYILKWYYSKKEGLCRQFWY
GSCGGNANRFESEEECMTHCVSQHY
NT seq
7098 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttggaagacatattgggcagtcatcttccttgcagctagttttgatcttatc
aaatcccagagaattgtctgcaggaaagcctctgttggagatgtcgtgtttctggtgaac
acaaacattaagccccagtatgcccacatcatgagaagcttcttgaacaatgtgatccag
ggttttaatatcaccaaagagacggttcgtgtgggcttggccctgtacagtgatgtgccc
cattctgagttcttactttcaacctaccactacaaaaaccaaatgctgaaacacattcag
aagcttcagtttacacctgggggcaacaagatgggctcggccctgcagttccttctagat
cactacttccaggaaacagctgtgagtcgggctgggcagggtgtgcctcagattgcagtg
gtgatcagcagtggtatagctgaggaccatctgcaggaacctgctgaggcgtttagaagg
ttaggcatcatcctgtatgccattggcatcaaagatgcagttttgacagaactcaagaga
gtggctagtaatcccgtggagaagtttaccacctatgttcccagcttctctgttcttggc
aaactggctccaaagctgaggcaggaactctgcgatattttggcaaaggaagttcaacct
gacaaccgcatctccccagcttgcagagatgcaatgttggcagacnnactactcctaata
gacaactcaactagcatcgaatcacagtacttccagaaagagaagaagttcctttattct
gcctcttggaagattaatattggcagtgactaggtctgagtagatcttgttcagtataat
aacatctactctgcgtttcagcagaatcagtatgctcagagaagcatggtcctggagaaa
attcaaaatctttctattgaacaggaggtacaaactcagggagtgccttagaaccagcta
cttgattgaggcagctgacagctgggacaaggataggttccccaaatcgttacccgaata
agagatggggagtcaattgatgaagcccaggaggcagctggcatgttgaaagaagatgga
gttgtatatttggtagggatcaaagttctgtatatacatgggttgaataaaatagacaac
aagttatttgagaagcttctcttcaatagagaaagtttagcattttatagaaaattttca
ggaagatttcttcaaactcaatgcttggcagtggagagtaagataaaagaattgactaag
acctatgcagatgtggtctttcttgctgacacctctcaagacacatcaagagccagtttc
cagtggatgcagactttcatctccaaagtggttggcttactcgatgttggcaaagacaag
taccgaattgggctggctcaatatggtggacaaggccatactgaatttcttttcaatacc
taccagacccagaatgatattattgctcatatccatgaccactttgtgttccgtggtggc
tccaggaggacaggcagagctctgagataccttcaggagactttctttcaagaggcggct
ggaagtcggtttctccagggcattcctcagtatgcagtggtcatttctgcaggaaaatct
tcagatgaggtcaaggatgctgcacaaattctgaaggagaaaggcgtgaaagtcatgtct
gtgggtgtacaggattttgacaggagagagctggagtatatagggtctccctcccttgta
tatgagaaacaaggacaagagggagtcagagagataatacaagatgtcaatgtggtgcta
caaggtactggaagggagttcaccattgaagttgaaaaggaagctatttctgcatgtcca
actgctatcccggctgatgttgtattcctcattgaggactttagcagggtcagacattca
aatttccaacaagttgtcagtttcttaaagaccatggtcagttctctgagaattcatcct
gatgttgtgaggatgggcttggttttttacagtgaagaatcaaaacttgagttttctttg
gatacctatcagactgcatcacaaatctttggacatttggacaaattaacctacagggaa
agaagaggagggaccaagactggggctgccttggactttctaaggaataaggttctactt
ccagagatgggtggtcggaggatgaaaggtgtgaaacagatagccgtggtcatcactgaa
aactcctcccaagatagtgtggccagaccagcctctctcctccgcaaggccgaagtcacc
atctatacagtgagcactcagtttactgagagtaaggacctagaaaagattgcatcctat
ccttcatggaagcatgttgtccatctagaatcctttctgcaactctctgtggtgggaaat
atgattaagaatcaactgtgccctgaggttgtgggcagaagtgtctcctcttctggaatg
agctttgttcttcaaacaggttgtgctcaagtggagaaggcagatatttacttccttatt
gatgggtctgacagcatccaacaagatgattttctggaaatgaagatgtttatgaatgag
atgataaaaatattccgtgttgggccagacagtgtacagtttggagttgttcagtactca
gagggagtcagtattcattttattctcaatcagtattccagtgtggtagatttaaaggca
gccattgatgacatccaaaagagaagtggtggcactgagacaggatctgccttgatgacc
gtggctcaggcttttgcagacactgctcgcagcggtgttccctggtatctcatcatcatc
actgctggaaaatctgaggactcagtggctattcccatagaggttttgaagagagaagga
gtcaatatttatgcaattggagtcagagacgctaatattgctgaacttcaggaaatagct
aatgacaaggcattttttgtgcatgaatttgattctctgaaggccattcaacaggaagta
atacaggacatatgttcctcagagagctgtaaaaataggaaagctgacatcatctttttg
atcgatggttcagaatctatctcctcacaaaactttgaaaagatgaaggcatttatgaag
aggttggtgagccatgcaaatattggtcctgaagaaattcaaattggccttctgcaattc
agctcaactcctcaagaggaattcaggctcaaccaatactactcaaaggtggacatctat
agagctatctcagatatgcagcaattgaatgatggcacccgcacaggcaaagccttgagt
tttactctgcctttttttgatggttcaagaggagggagagagagtgttcatcagtatttg
attgtgattactgatggggttgcccaggataatgtagtcataccagctcaggctctcagg
gacagaaacatcattatttttgccattggggtgggagaagccaaacactctcagcttttg
gagattactaatgatgaggacaaagtatactatggagaaaaatttgagtccctgcagaac
atggagaaggaaattctttttaaagtctgcattccacaaggatgcagtgtagatttgtcc
ataggaattgacatctctactcccacaaagcaagttgagcagaagcttcaacagttactg
ccagagttgatgcaccatttggcttttcttcccaacatcagctgtaatgctcccactcag
atcaatactatgtttcgcttcctggctcttggctccaatggtcagctaacctttgattca
ggccttgggaagctgaataatgacagcattcaggtttttcttcatcagcagactgcccaa
agtagccatatgaatgtggattttttgcagtctttgggcaatcatgctctccactcttct
gcaaaagtgaaggtactacttgtgtttacagatggactggatgacaatttacaggcactg
aaaataatatcagagctactccgcaacaaaggactctctggacttctctttgttggcctg
gaaaacgtgcataaattagaagagcttctggagctagaatttggcaggggatttgcctat
aatcaacctttgagtctctcactgccatctctcccaactaccttattgaggcaactggta
agtttgttttttcaaaaacattgttgcaatatatatgccaagtgctttggagatgacggg
catagaggtggtagtgggaaccttggaaagaagggaaagaaaggctttgatggattacct
ggctattctggagaagaaggccaacatggagaaagaggtccccgaggttttcctggactc
caaggagagcaaggatgctcaggtgccagagggcctcaaggtgcaagaggattttcagga
gaaaagggcaactctggtgaagatggtttagatggcctggatggagaacagggtaattat
ggaattccaggaccatctggagaaaaaggaaaccagggaaaacggggcttgacaggacca
ccaggaaaacctggagagcgtggtgcacctggactcaggggtgatcctggagatcctggt
cttgacagttatatccaaggctcaaagggagaaaagggaagacgtggacacctgggaagt
tctagctttgatggacctcagggggatactggaaacattggtgctcggggatcaagagga
agaagaggtcagccaggattgaagggtctaaatggaagaattggtcaacgaggtttccaa
ggagagcgtgggcatccaggatctaagggaccaagaggaaggcaaggaccaccaggaata
tttggacaaaagggctttcaggggattcaggggcatcttggacctcaaggaccaaaaggt
tcagagggaaaatatggaccaatgggattgaagggagatattggtgatcctggtataaaa
ggtccacaaggaaaacaaggaccaagaggacagtctggatattttggtccagatggatac
ggatatccaggaagaaaggggaaaaagggtgaatatggatttcctggctatcctggtgca
caaggagaagatggtgacttgggccacccaggagagaaaggggcaaagggcatcaaaggg
aggagaggaaatgctggttttcctggattggttggaacttccggtgaccaaggcccacca
ggaccagagggcatcaagggccccaaaggtttggtagacaaaaaaccttgtgaaattgtt
gacttaatccgagaaaactgtcgtaagttgaaaacggttcaaaggagccaaaattggagc
atggggatagatcatgagctgaagacattaattactagtgggttggacagtgatttagga
gtttccattttcatcataaaaggctcttgtgtttctaaatgccccgtgttcccaactgaa
gtggtctttgccttggatatgtcaagtggtgtctctcaactggagtttgagagaatgaga
gatattttaatatctctgttgatgaagatggaaataagtgaaagtaactgcccaacgggt
gcccgagtggccatcgtttcttacaactccaaaacgaattacctggtccgcttctcagac
tacaaggggaagcttgccctcctgcaggctgtgaggaagatttccctggaacagtcctct
gaaagcaggaaccttggagactctatgaggtttataggaagacatgtattcaagcatgtg
cgttcaggtcttctcgtgagaaaagtggctgtgttcttccaggcaggctgggcttatggt
gtcaatgctgtcgtcactgccatcctggaactcagtgctctagatattacctctgcaatc
atcaccttcacagaagaacacaaccttccagaggccctactgatggaagaaaccaacaga
tttcacttgtttatctgggagacgaagtaccagcaggatgtggagcacatggcccgttgc
actctctgctatgacatgtgccacccagccccaggatgcagaccagaaacacctgggccc
ctggaagtagatgctgacttggtattcctggtggactactcccaactggttgacaccaac
ctctaccatgctgcattgaatctagtatcagccacgctccataacctggaaatctctgct
cagccaagcgtgtcctaccaggggactcgtgcagctctcatgatacacacgactcagggc
tactggcctggtagagggagcctcccagtgttggttgccttcaacctgacctcctacaac
aagcggaaacagatgctacagcgggtccaagatgtctcacatcgctccttgcagggagag
cccgcactgggccactcattggagtggaccttgaataatgtgctcctgactgctccattg
cccaggaggaaacaggtccttttagccatcgtggccagtgagactagtagttgggaccag
gagaagctaaggactctgtctttggaggccaagtgcaaaggcatcactctgtttgtgctt
gccttgggtcctggtgtgggaaccgttgagctggaggaactggccctagtggccagcacc
ccattggaacagcacctgttgcacctcaggggagtctcagaccaggagctagcctatgcc
agcagattcataagggccttcctgaacatcttcaaaagtggaacaaaccagtacccaccc
ccagaactcattgaagaatgtgggggcccaaaccgaggagacactcggctaaaatcactt
ttgcctctctcaggtttagaagctcctgatgcaatcaccgcttttctagaggagcaaagt
aaagttctagcgacatctacaattcgtcaagaatcacttgacatttttgcaaggaacggc
tatgaggctgaagaaaatcaagtcaaaaggctactcaaacaaaatgaaacaggaaaaaaa
gaaccttctggcactgttgatggtccttgttccttggagccaatggaaggtgaatgccag
gattacatcctcaagtggtactacagcaaaaaagagggcctttgccgacagttctggtat
ggcagctgtgggggcaacgccaaccgttttgaaagtgaagaagaatgcatgactcattgt
gtatctcagcactactag
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integrated database retrieval system
