Suncus etruscus (white-toothed pygmy shrew): 125997903
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Entry
125997903 CDS
T09902
Symbol
COL6A5
Name
(RefSeq) collagen alpha-5(VI) chain
KO
K06238
collagen type VI alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04820
Cytoskeleton in muscle cells
setr04974
Protein digestion and absorption
setr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125997903 (COL6A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125997903 (COL6A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125997903 (COL6A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125997903 (COL6A5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
125997903 (COL6A5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
125997903 (COL6A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
125997903 (COL6A5)
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
125997903 (COL6A5)
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125997903 (COL6A5)
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125997903 (COL6A5)
Hyaluronan
Extracellular matrix or blood plasma proteins
125997903 (COL6A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
vWA-TerF-like
Copine
Nexin_C
Motif
Other DBs
NCBI-GeneID:
125997903
NCBI-ProteinID:
XP_049622044
LinkDB
All DBs
Position
20:25474169..25579845
Genome browser
AA seq
2586 aa
AA seq
DB search
MKHESAEPGPEYADVVFLVDSSDNLDTKSLPFVKTFLTKMINSLPIEVNKYRVALAQYSD
TLHNEFQLSTFKNKSPMLNHIKRNFRFLGGFLKIGNALHEAHRTYFSGHTNGRDKKQFPP
ILVVLASGESEDDVEVAAQALKKDGVRIIAVGIQEASEENLRAVATGPFHFKLRTVRDLS
PFSKNMTEIIREATKYKEAVAEIDVPLPLPKACQKDSLADIVFLVDSSVGSLRNLKHLQN
FLKTIATSMDVRNNCVQLGLMSYTNRAEILSVLKSSTSRSEFLQQTQKLSVQSGRSNARI
AIEKLEKDAFSVSSGSRIAQGVPQMAVLITQRPSDENVREVAMDLRLMGVSVFALSIEGA
NNTQLEDIVSYPPEETVTKLNSYAALESYSETFLKKIQNKIWSQMFVRAEQKDLEKIGCM
DTQEADIYFLIDGSSSIQRKQFEQIKKFMLDIIKMFTIVPDKVRFGVVQYSHKIEEEFDV
GDYSNEVDLQKAVSNIKQLQGNTTTGKALDFILLKIKNGRTRRSIQAPHYLIVLTDGKSM
DSVLEPAEKLRAEKVTIYAIGIGSANKTQLRQIAGTEGRVIFGQSFDSLQHIKDKIVHGI
CSHKACENMKIDIMFLMDSSGSIGDENFKKMKIFMKNLINKIEIGPDKTQIGVVQFSDDS
KEEFQLGTYLTHQKIYDAIDRIVAIGSTTNTGHALTSLLPYFTPARGARVGVRQFLIVIT
DGEAQDSVVEPAQVLRDSGVIIFSVGVYGANRTQLEEISGNSSQVFHVENFDLLKNIEEQ
LIFQVCALHDCKGIEKLDVVFVLDQSSSIKPQDQESMINLAIHLVKEANVGRDRVQFGAL
KYSTYPEVLFHLNTYSHKSAIIEHLKQYKSSGGDTYTARALNYTNKMFTEEHGSRLKQNV
GQILIIITDGESHDKMELNNTALTLRNKGINIYAVGVGEAKPDELEGMAGDKAKAIHVSD
FKELEKMYQFFQEEMCQSSSEDCRSTDVIFLCDSSKEVSTKDFSTMKVLLSDLYDMIGIQ
PQKARVGVALFGKLYQEKINLDASLTKNEWKAEIQALPHLGTNFAILTPLLKVIFMFSKE
NGGRREAGIPQNLVVITSQPPDRDVSKAVEKLREQNIRILVISIGIHSKDQFLPLTGNPD
YIISLKNFQQLNSALNKKRIVREICQQDQPSNCTVNVVVGFDISTHVMGQRLFDGHSQLE
SVLPGILEEISSISGVSCGGGSWTQVSLAFKVNSDQQSPTKFFIYKKDLFKKHLLTATVN
GPSHLNGQFLQTLWDTFEDPSPSQGQVLLIFSDGLGDESAIMLEEQSDRLRAAGLDALLV
VSLNTASHEDFSYFEFGKGFDYRTHLTIGMKDVGTMLARYLGNIAERTCCCQFCKCVGPR
GERGIPGKQLEQGQPGVKGSRGHWGEDGEPGKRGDMGPIGEKGIAGCSGERGQKGVRGVS
GYKGDVGEHGIDGIDGEEGFHGFPGVKGEKGEPGSQGSPGYRGSPGEYGEKGFPGDPGQS
GRNSRIKGQKGSKGEEGGQGRTGQKGAKGSPSSRGIRGREGRRGNPGTPGISGNPGLKGE
LGPEGLQGLQGSRGPPGRKGEKGNYGHKGPQGAAGPGGPKGNTGSPGLPGKKGEVGVFGG
PGPFGQMGQRGKQGDDGIPGYGQKGRKGIKGPRGFTGEMGQKGDVGDPGTPGVPGPKGFK
GLAYMTGSKGEGGLRGNPGPPGRRGPKGMPGLPTYPLCDLIHFLRNKSSCWKDRCPVYPT
EVVFALDQSFDIGESRFNEMRDHIISIVEGLHTRTNNCPVGARVVVVSYDFTINYLIRQF
DYHSKKQLIQLLSQINYQPPTGVQDIGSAMRFVARNVFKHTSAGTNVRRVAVFFSNAQTI
NMASVITATMEFSGLDISLAVMAANERIFLDAFEFDNTGMFQAIPSPPGVEYIPDSLWRC
TLCYDKCFPNNCAREIFLPEDSFIDVAFLIDNSRSITSDEFKALKTLLRSMLGNFKISSN
PLAAHLVGDRIALLSYSPLDSSRKVINIEFDFTTFNNQDQMENYIQTSFHQLNGEENIGY
ALRWIIENLFPRTPNLRQHRVIIVVSAEENKERKDFLKRMALKAKCQGYVIFVISLGSTH
GDYMEELASYPLDHHLIQLGKIHKPDLDYIVRFLKPFVYSVRRKFNQYPPEMLEDDCRRY
SDRGDYSDLFTPEPPEISSGESSFLVQELSAEREMSFVLEENGSNHLVYIPNHVIMPQEM
LIKYEKDEKSEEMASLHSGLLENQGREEPRLTYEPRDASSQDYYMDVAFLLDTSYRVGND
DFKDVKTFIISVLAYFHIAPNPLLSNVGDRVAVLSYSPPGYLPNTEECPVYLEFDLLTYN
SKPQMENHLQNSLQKLNGDVFLGHALQWTIDNVFIGTPNLRKNKVIFVISAGETNPLDKE
VLKNVSLRAKCQGYSIFVFSFGPVHNYNELEELASHPLEHHLVQLGRAHKPDWNYIIKFL
KPFVHLIRDAINKYPPAHLIPKCVNITSPTPESIGTENNVFFIPGVFEIQTESSEVYDEF
GSQEHSFKLRNDDSNGPESSTDLIQKLYQLFTTGELEMKPKKAQSEEIAAPANEKQRDEQ
DDEETL
NT seq
7761 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatgaatcagcagaaccaggccctgagtatgcagatgttgtgtttctggtggac
agctctgataatctagacaccaagtccttaccgtttgtgaaaacttttctcaccaagatg
atcaacagtctccctatagaggtcaacaagtaccgtgtggccttggcccagtacagtgac
acattgcacaatgaatttcaactgagcaccttcaagaacaagagccccatgctgaaccac
atcaagaggaacttcaggtttcttgggggcttcctaaagataggaaacgctctccatgaa
gcccacagaacctatttctctggacacacaaatggcagagataagaaacagtttcctccc
attttggtagtcctggcctctggcgagtctgaggatgatgtggaagtggctgcccaggct
ctgaagaaagatggggtgaggattatcgctgtggggatacaggaagcctctgaggagaac
ctgagggccgtggccacaggtccgtttcacttcaaactccggacggtcagagacctcagc
ccattttccaagaacatgacagagatcatcagggaagcaactaagtataaggaagctgta
gctgagattgacgtgcccttgcccttgcccaaagcttgtcagaaagattcacttgctgac
attgtgtttctggtggattcatcagttgggtctctacgaaatttaaagcacctgcagaac
tttctgaaaactattgccacctccatggatgtgagaaacaactgtgtccagttgggactg
atgagttacactaacagagctgagattctctctgtcctgaagtcaagcacatcccgatct
gaatttctgcagcaaacccagaagctttctgttcaaagtggaagatccaacgctaggatt
gccatcgagaagttggagaaagatgccttctcagtgtccagtggcagcagaattgcccag
ggtgtgcctcagatggcagtcctgattactcagagaccatcagatgagaatgtgagggag
gttgcaatggatcttcgacttatgggtgtctctgtgtttgccctgagcatcgaaggagct
aacaacacacaattagaagatatagtatcataccctccagaagagacagtcaccaagctg
aattcctatgcagcacttgaaagttacagtgagacattcctaaaaaagatccagaataaa
atatggtcccaaatgtttgttcgtgctgaacaaaaggatcttgagaaaatcggttgtatg
gacacacaggaggctgatatctatttcctcattgatggctcatctagcatccagcgtaaa
cagtttgagcaaatcaaaaaatttatgttggatatcataaaaatgttcaccatcgtccca
gataaagttcgatttggtgtagtgcaatattcacacaagatagaagaagaatttgatgtc
ggcgactattctaatgaagtggatttgcaaaaggctgtttctaacatcaaacagctccaa
ggcaacaccactactgggaaagccctggatttcatcctgctaaaaataaagaatggaagg
acaaggagatcaatccaggctccccactatctcattgtattgactgatgggaagtccatg
gacagtgtcttggagcctgctgagaaactaagggctgagaaagtcaccatttatgccatt
ggcattgggagtgccaataagacacaactgcggcaaattgctgggacagaaggaagggtt
atctttggacagagttttgattctttacaacacataaaagataaaattgtgcatggaatt
tgttctcataaagcatgtgaaaacatgaagattgacatcatgttcctgatggacagttct
ggcagtataggtgatgaaaatttcaagaaaatgaagatcttcatgaaaaacctgataaat
aagattgaaattggacctgacaaaactcagattggcgtggttcagttcagtgatgacagt
aaagaggaattccagctgggcacatacttgacacaccaaaaaatttatgatgccattgac
agaattgttgccattggcagcaccactaatacagggcatgctctaacttctctgcttcct
tacttcacccctgccagaggggcccgtgttggggtcagacagtttcttattgtcattacg
gatggagaagctcaggacagtgtggtcgaacctgcccaagtgctccgggactcaggtgtg
atcattttctctgtgggtgtgtatggtgccaatcggacgcagctggaggagatcagcgga
aacagcagtcaagtgtttcatgtggagaactttgatcttctaaagaacatagaagaacag
ctcatcttccaggtgtgcgcactgcatgattgtaaaggaattgaaaagctagatgttgta
tttgttctggaccagtcaagcagcatcaagccacaagatcaagaaagcatgattaacctc
gccatccacttggtgaaggaagctaatgttggcagggaccgcgtgcagtttggagctctc
aaatactcaacttatcctgaggttctctttcaccttaatacatattctcacaaatcagcc
atcattgagcacctgaagcagtacaaaagcagtggaggagatacctacactgctagggct
ctcaattacacaaacaaaatgttcactgaggaacatggaagccgcctcaagcaaaatgta
gggcagatactaatcatcattaccgatggagaatcccatgacaaaatggagcttaacaat
acagccctgacattaaggaacaaaggaatcaacatctatgcagtgggtgtaggagaggcc
aagccagatgaactcgagggtatggcaggagataaagcaaaagctattcatgtaagtgac
tttaaggaactggaaaaaatgtaccagtttttccaagaagagatgtgccaaagttcatca
gaagattgcagaagcaccgatgtgattttcctttgtgacagttcaaaagaagtatctact
aaagatttttctacaatgaaagttttattgtcagatctatatgatatgattggtattcag
cctcaaaaagcaagagttggggtggcccttttcggaaaattgtaccaggaaaagattaat
ttggatgcctctctgacaaaaaacgaatggaaagcggaaatccaagctctgccacacctt
ggtaccaacttcgccatcttgacacctcttctcaaagtgatatttatgttcagcaaagag
aatggtggtagaagagaggcaggcatccctcagaacttagtggtgatcacaagccagcct
ccggatcgcgatgtgtcaaaggcagtagaaaaactgagagagcagaacatccgcatcttg
gttataagcataggaatacattccaaggaccagtttctaccattaacaggcaatcccgat
tacataatctccttgaaaaacttccaacaattaaattctgccctgaataagaaaagaatt
gtccgggaaatctgccagcaggaccagccaagcaattgtactgtgaatgtagtggtcggg
tttgacatttccactcacgtgatggggcagcgactgttcgatggccattcccagctggaa
tcagttctcccaggcatcttggaggaaatctcctccatcagtggagtgagctgtggggga
gggtcctggacacaggtgtccctggcctttaaggtaaacagtgaccaacagtctcctacc
aagttctttatctacaagaaagatctattcaaaaaacacctgctgacagctaccgtgaat
gggccaagccatctgaacggacagtttctacagacactgtgggacacattcgaagatcca
tccccatcccaaggacaggtgctgctcatcttttcagatggtctgggtgatgaaagtgcc
atcatgcttgaagagcagtctgatagactcagagcagcaggactcgatgctttgctcgtg
gtgtccctgaacacagcttctcatgaggatttttcctactttgagtttggaaaaggattt
gattacaggactcacctgaccattgggatgaaagatgtgggcacaatgctagcacgatat
ctgggaaacattgccgagaggacttgctgctgtcaattttgcaagtgtgtagggcctcga
ggagagcgtggaatcccaggaaaacaattggagcagggacagccaggtgtcaaaggtagc
agaggacactggggagaggatggtgaacctgggaaaaggggagacatgggacccatagga
gaaaaggggattgcaggatgttcaggagaaagaggccagaagggtgtcagaggagtttcc
ggatacaagggagatgtaggggagcatgggattgatgggatcgatggagaagagggattt
cacggattccctggagtaaaaggagaaaagggtgaaccgggatctcagggcagccctggt
tatagaggttcccctggggaatatggagagaaaggcttccctggagacccgggtcaatca
ggaagaaatagtcgtatcaaaggacagaagggctccaaaggggaggaaggcggccagggt
agaactggccagaaaggggcaaaaggcagtcctagttccagaggaatcaggggaagagaa
ggccgaagagggaacccaggtaccccggggatttcaggaaatcctggactgaaaggtgaa
cttggacctgaagggctgcaaggcctacaggggtcacgtggacctcctgggcgaaaagga
gagaagggaaattatggacataaaggacctcagggtgctgctgggcctggaggacctaaa
ggaaacactggaagtcctggacttccgggcaaaaaaggagaagttggtgtttttggaggt
ccaggaccatttggacaaatgggacagcgaggaaaacagggagatgatggcatccccggt
tatggtcagaaaggacggaaaggaataaagggcccacgaggattcactggagaaatgggg
cagaagggtgatgttggtgatcctggaactcctggggtacccgggcccaagggatttaag
ggactagcatacatgacaggctccaaaggagaagggggacttcggggaaaccctggccct
ccaggtcggagaggtcctaaaggcatgccaggattgcctacctatcctttatgtgacttg
atccacttcctgcggaacaaaagttcttgttggaaagacaggtgtccagtgtacccaaca
gaggtggtatttgccctggaccagtcctttgacattggagaatcaagatttaatgaaatg
cgtgatcacatcatttccattgtggagggccttcacaccaggacaaataattgccctgta
ggagcaagagtggtagtggtttcctatgatttcactatcaattatcttatccgtcagttt
gactaccacagcaagaagcagctcatccaacttctgtcccagattaattatcaaccccca
acaggagtccaagatattggtagtgcaatgaggtttgtggcccggaatgtgttcaagcat
acctctgctgggaccaatgtgaggagggtggctgtgtttttcagcaacgcacaaactatc
aacatggcatctgtcatcacagccaccatggagtttagtggcttggacatcagtctagca
gtcatggctgctaatgaaaggatcttccttgatgcttttgagtttgacaacaccgggatg
tttcaggcaatccctagtcctccaggagtagaatacataccggacagtctttggcgctgt
acactttgctatgataagtgttttccgaataattgtgccagagagatttttttacctgaa
gattcatttattgatgtagccttcctcatagacaattctaggagtattaccagtgatgaa
tttaaggctttgaaaaccttattgagatcaatgcttggcaactttaaaatttcttcaaac
cctttagccgcacatttagtaggtgataggattgccttgttgagctattctcctctggat
agttccaggaaagtgataaatatagagtttgactttacaacttttaataatcaagaccaa
atggagaactacatccagactagcttccatcagctaaatggagaagaaaacattggctat
gccctacggtggatcatagagaatctctttccaagaacaccaaacttaagacaacatagg
gtcatcattgtggtgtcagctgaagaaaataaagagagaaaagacttcctaaagaggatg
gccctgaaggctaagtgtcagggttatgtcatatttgtgatttccctgggctctacacat
ggagattacatggaggagttagccagctacccacttgatcatcacctgatacagcttggg
aaaattcataaaccagatctggattatattgtgagatttctaaagccattcgtgtactca
gtcagacgaaaattcaatcagtacccacctgaaatgctcgaggatgactgcagacgctat
tcagatagaggagattactctgacctatttactcctgagccgcctgagatttcttcagga
gagagcagcttccttgtccaggaactgagtgctgaaagagaaatgtcttttgtgttagaa
gaaaatggaagcaaccatttagtttacattcccaaccatgtgataatgccacaggaaatg
ctgattaagtatgaaaaagatgagaagtctgaagaaatggcaagtctccattctggacta
cttgaaaatcagggcagagaagaaccaagacttacatatgaacctagagatgcctcttct
caagactactacatggatgtggctttccttctagatacttcctacagagtaggaaatgat
gactttaaagatgtgaaaactttcataatctcagtacttgcttactttcacattgcccca
aatccattgctctccaatgtaggagacagagtggcagtcctgagttattctcctccaggt
tatttgcccaacactgaagaatgccctgtctacctggaatttgatttgcttacttataac
agtaaaccccaaatggaaaatcatctccaaaattctcttcaaaagctcaacggagatgtt
ttccttggtcatgctttgcagtggactatcgacaatgtttttattggtactcccaatttg
aggaaaaacaaagtcatttttgttatttctgctggtgaaacgaaccctttggacaaagaa
gtcttaaaaaatgtatctctgagagccaagtgccagggctattccatatttgtgttttcc
tttggtcctgtgcacaattacaacgaattagaagaattagccagccacccactagagcat
cacttggtccagcttggccgagcccacaagcctgattggaactacatcatcaagtttctc
aagccatttgtccatttaatcagagatgccatcaataaataccccccagcacatctgata
cccaagtgtgttaacatcacttctcccactccggagagtattggaacagaaaacaatgta
ttctttattcctggggtgttcgaaatacagacagaaagcagtgaggtgtatgatgaattt
ggctcccaggagcattcatttaaattaaggaatgatgatagcaatggtcccgagtcctct
actgatttgatccagaagttataccagctctttacaactggggaactggaaatgaaaccc
aagaaggcacaatctgaagaaattgcagctccagcaaatgagaaacagagagatgaacaa
gatgatgaggagacattatga
DBGET
integrated database retrieval system
