Suncus etruscus (white-toothed pygmy shrew): 125997969
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Entry
125997969 CDS
T09902
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03020
RNA polymerase
setr03420
Nucleotide excision repair
setr05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125997969 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
125997969 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
125997969 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
125997969 (POLR2A)
03400 DNA repair and recombination proteins [BR:
setr03400
]
125997969 (POLR2A)
Enzymes [BR:
setr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125997969 (POLR2A)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125997969 (POLR2A)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125997969 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
125997969
NCBI-ProteinID:
XP_049622113
LinkDB
All DBs
Position
20:complement(43869131..43898993)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITDDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYCSWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcggccccccctcgggggacagcgcatgcccactgcgcaccatcaagcgg
gtacagttcggagtcctgagcccggacgagctgaagcgaatgtcagtgacagaagggggt
atcaaatatccagagacgactgagggaggccgccccaagcttgggggcctgatggatcca
aggcaaggggtgatcgaacgaactggccgctgccagacatgtgcaggaaacatgacggag
tgtcctggccacttcggccacatcgagctggccaaacctgtgttccacgtgggcttcttg
gtgaagacgatgaaagttttacgctgcgtctgctttttctgctctaaattgcttgtggac
tctaataacccgaagatcaaggacatcttggccaagtcgaagggacagcctaagaagcgg
cttactcacgtctatgacctttgcaagggcaagaacatctgtgagggtggggaggaaatg
gataacaagttcggtgtggagcagcctgagggagacgaggacttaactaaagaaaagggc
cacggtggctgtgggcgctatcagcccaggatcaggcggtcaggcctggagctgtacgcc
gagtggaagcacgtcaacgaggattcccaggagaagaagatcctgctgagtcccgagcgg
gtgcatgagatcttcaagcgcatctcagacgaggagtgcttcgtgctgggcatggagcct
cgctatgcccggcctgagtggatgatcgtcaccgtgctgcccgtgcccccgctttccgtg
cgacctgcagtggtgatgcagggctcggcccgcaaccaggatgatttgacgcacaaactg
gcggacattgtgaagatcaacaatcaacttcgccgcaatgagcagaacggtgcggccgcc
catgtcattgctgaggacgtgaagctcctccagttccatgtggccaccatggtagacaat
gagctgcccggcttgccccgtgctatgcagaagtctggccgtcccctcaagtccctaaaa
cagcgactgaaaggcaaggaaggccgcgtgcgagggaacctgatgggcaagcgagtggat
ttttctgcccggactgtcatcaccccagatcccaacctctccatcgaccaggttggcgtg
cctcgctccatcgccgccaacatgacctttgctgagattgtcacccccttcaacatcgac
agacttcaagaactagtgcgcagaggtaatagccagtacccaggggccaaatacatcatt
cgagacaatggcgatcgcattgacctccgcttccaccccaagcccagtgaccttcaccta
cagactggctacaaggtggaacgacacatgtgtgacggggacatcgttatcttcaaccgc
cagccaactttgcacaaaatgtccatgatgggtcatcgggttcgcatcttaccctggtct
acctttcgtctgaaccttagtgtgacaacaccatacaatgctgacttcgatggggatgag
atgaacttacacctgccccagtctctggagactcgggcagagatccaggaacttgccatg
gtgccgcgcatgattgtcaccccccagagcaatcgccccgtcatgggcatcgtgcaggat
acgctcaccgcggtgcgcaagttcacgaagagagacgtcttcttggagcggggtgaagtg
atgaacctcctcatgtttctatccacgtgggacgggaaagtcccacagccagccatcctc
aagcctcgacccctgtggacaggcaaacagatcttctcccttatcattccgggccacatc
aactgtatccgcacccacagcacacatcctgacgatgaggacagtggcccttacaaacac
atatctcccggggacaccaaagtggtggtggagaacggggagctgatcatgggcattctg
tgcaagaagtctctgggcacatcagctggttccctggttcacatctcttaccttgagatg
ggccacgacgtcactcgcctcttctactccaacatccaaactgtcatcaacaactggctg
ctcatcgagggtcataccattggtattggggactcgattgctgattcaaagacttaccag
gacattcagaacactattaagaaggccaaacaagatgtaatagaggtcatcgagaaggct
cataacaatgagctggagcctactccaggaaacactctgcgacagacttttgagaaccaa
gtgaaccgcattctcaacgatgcccgagacaagactggctcctctgcccagaaatccctg
tctgaatacaacaacttcaaatctatggtggtctctggggccaaagggtccaagatcaac
atctcccaggtcattgctgtggtcgggcagcagaacgtggagggcaagcggatccccttt
ggattcaagcaccgaaccctgcctcacttcattaaagatgattatggacctgagagccga
ggctttgtggaaaactcttacttggctggcctcacacccaccgagttcttcttccatgcc
atgggaggccgtgaagggctcatcgacacagctgtgaagactgccgagactggatacatc
cagcggcgattgatcaagtccatggagtcggtgatggtgaagtacgacgccacagtgcgc
aactccatcaaccaggtggtgcagctccgctatggcgaggacggcctggccggcgagagc
gtcgagttccagaatctggcgacccttaagccctccaacaaggcttttgagaaaaagttc
cgattcgattacacaaacgagcgagctctccggcgcaccctgcaggaggatctggtcaag
gatgtgctcagcaacgcgcacattcagaatgagctggaacgagagttcgagcggatgcgc
gaggaccgggaggttctcagggtcatcttcccaactggtgacagcaaggtggttctcccc
tgtaacctgctgcgcatgatttggaacgcccagaagatctttcacatcaaccctcgcctc
ccctccgacctgcatcctatcaaggtggtggagggagtgaaggagttgagcaagaagttg
gtgatcgtgaatggggatgaccctctgagccggcaggcccaggagaacgcgactctgctc
ttcaacatccacctgcgctccacgctgtgctcccgccgcatggcggaggagtttcggctc
agtggagaggcctttgactggctgcttggtgaaattgagtccaaattcaaccaggccatt
gcccaccctggggaaatggtgggagctctggctgcacagtccctgggagagcccgccacc
cagatgaccttgaacaccttccactatgccggtgtgtctgccaagaatgtgacgctggga
gtgcctcggctgaaggagctcatcaacatctccaagaaaccaaaaaccccctcacttact
gtctttctgctgggccagtcggctcgagatgcagagagagccaaggacattctctgccgc
ctggaacacacgacgttgaggaaggtgactgccaacacagccatttactacgaccccaac
ccccagagcacagtggtggcagaggaccaggaatgggtgaacgtctactatgagatgccg
gacttcgacgtcgcccggatttcaccctggcttttgcgggtggaactggaccggaagcac
atgactgaccggaagttgaccatggagcagatcgcagagaaaatcaatgctggttttggt
gatgatttgaattgcatctttaacgacgacaatgcagagaagctggtgcttcggatccgc
atcatgaatagcgatgaaaacaagatgcaagaggaggaagaggtggtggacaagatggat
gacgatgttttcttgcgctgcattgagtccaacatgctgacggacatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacctgcctcagacagacaacaaaaagaagatc
atcatcacagacgacggggagttcaaggccctgcaggagtggattctggagacggatggc
gtgagcttgatgcgggtgctgagcgagaaggacgtggaccccgttcgcaccacgtccaat
gacattgtggagatcttcacggtcctgggcatagaagctgtgcgaaaggccctggagcgg
gagctgtaccacgtcatctcctttgacggctcctatgtcaactaccgacacttggcgctc
ttgtgcgataccatgacctgccgtggccacttgatggccatcaccagacacggggtcaac
cgccaggacaccggccctctcatgaaatgctcctttgaggaaacggtggatgtgctgatg
gaagcagctgcacacggggagagtgaccccatgaagggggtgtctgagaacatcatgctg
ggccagctagctccagctggcactggttgtttcgacctcctgcttgacgcagagaagtgc
aagtacggcatggagatccccaccaatatcccaggcttgggagccgctggacccaccggc
atgttctttggctcagcacccagccctatgggaggaatttctccggctatgaccccctgg
aaccagggcgcgacccccgcctattgctcctggtctcccagtgtcgggagcggcatgacc
ccaggggcagctggcttctctcccagtgctgcctcagatgccagcggcttcagcccaggt
tactctcctgcctggtcgccaacgccaggttccccgggctccccaggcccctcgagtccg
tacatcccatcaccaggtggtgccatgtctcctagctactcgccaacatcaccagcctat
gagcctcgctcgcctgggggctacacaccccaaagtccctcctactcgcccacttcgcct
tcttactccccgacttctccatcctattctccaaccagtcccaactacagccccacgtct
cccagctactccccgacctcccccagctactcgccgacctcgccaagttactcgccgacc
tctcctagctactccccaacttcgcccagctactcccccacttctcccagctactccccg
acttcccccagctactccccgacctctcccagctactccccgacttcccccagctactcc
ccgacctcaccgagctactctcccacctcgcccagctactccccgacctcgcccagctac
tctccgacttcccccagctactccccaacatcacccagctattcacccacttccccgagt
tactcacccacaagtcccaactattcccccaccagccccaactacaccccgacatcacct
agctacagtccaacatcgccgagctactcgcctacgagccccaactacacaccgacgagt
cctaactacagtcccacctctccgagctactcccccacctcgccgagctactccccgact
tccccgagctactcgccgtccagcccacggtacacgcctcagtcgcccacctacaccccg
agctcgcccagctacagcccgagctctcccagttacagccctacctcgcccaaatatact
ccgaccagtccttcctacagtcccagctcgccggagtacaccccgacttctcccaagtac
tcgcccaccagcccaaaatactctcccacttcgcccaagtactctcctaccagccccact
tactcacccacgaccccaaaatactcgcccacctctcccacctactcccccacctctccg
gtgtacacccccacgtcccccaagtactcacccaccagccccacctactcccccacctcc
cccaagtactcgcccactagtcccacctattccccgacctcccccaaaggctctacctac
tcccccacttcccccgggtactcccccaccagccccacgtacagcctcaccagcccggcc
atcagcccagatgacagtgacgaagagaactga
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